View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0442_low_10 (Length: 281)

Name: NF0442_low_10
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0442_low_10
NF0442_low_10
[»] chr6 (1 HSPs)
chr6 (179-275)||(23118757-23118853)
[»] chr1 (2 HSPs)
chr1 (64-147)||(46894561-46894644)
chr1 (8-66)||(46894440-46894498)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 23118757 - 23118853
Alignment:
Q  179 gtgagatgaatagatgagacaacttagtaacctgttgggttgtgaaagggtgtgatgttaagctcttaagcacatcactggcttcttgagcagaaaa 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  23118757 gtgagatgaatagatgagacaacttagtaacctgttgggttgtgaaagggtgtgatgtgaagctcttaagcacatcactggctttttgagcagaaaa 23118853  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 46894561 - 46894644
Alignment:
Q  64 tttcatttttcagaatcaaattaacacatcaagaaaaacaaataacaactcttgtagcaccaacacttctcaacttgtctgatg 147  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46894561 tttcatttttcagaatcaaattaacagatcaagaaaaacaaataacaacttttgtagcaccaacacttctcaacttgtctgatg 46894644  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 46894440 - 46894498
Alignment:
Q  8 gtttgactattgttcttaccaaatcactttttgaaacatttcaataaacaaaatatttt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46894440 gtttgactattgttcttaccaaatcactttttgaaacatttcaataaacataatatttt 46894498  T

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