View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0442_low_15 (Length: 249)
Name: NF0442_low_15
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0442_low_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 28 - 249
Target Start/End: Complemental strand, 1535146 - 1534925
Alignment:
| Q |
28 |
aggagaagcctgatggcaaggaagatgcagcagcagctgatggaaataaggaaactcctgctaccgaagctaaagaaaaggagcctgaggataaggtgaa |
127 |
Q |
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| T |
1535146 |
aggagaagcctgatggcgaggaagatgcagcagcagctgatggaaataaggaaactcctgctaccgaagctaaagaaaaggagcctgaggataaggtgaa |
1535047 |
T |
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| Q |
128 |
tgaccgactcaattaatgttttctccaattgtcttgaaactgcaactgctactaattttctgcatctcatgatcacgaaataaacggatgattcgtcttg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1535046 |
tgaccgactcaattaatgttttctccaattgtcttgaaactgcaactgctactaattttctgcatctcatgatcacgaaataaacggatgattcgtcttg |
1534947 |
T |
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| Q |
228 |
tgattgaatgataaatcattca |
249 |
Q |
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|||||||||||||||||||||| |
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| T |
1534946 |
tgattgaatgataaatcattca |
1534925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 28 - 249
Target Start/End: Original strand, 1138489 - 1138707
Alignment:
| Q |
28 |
aggagaagcctgatggcaaggaagatgcagcagcagctgatggaaataaggaaactcctgctaccgaagctaaagaaaaggagcctgaggataaggtgaa |
127 |
Q |
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|||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
1138489 |
aggacaagcctgttggcgaggaagatgcagcagcagctgatggaaacaaggaaactcctgctcccgaagctgaagaaaaggagcctgaggataaggtgaa |
1138588 |
T |
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| Q |
128 |
tgaccgactcaattaatgttttctccaattgtcttgaaactgcaactgctactaattttctgcatctcatgatcacgaaataaacggatgattcgtcttg |
227 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| |||| ||| || |
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| T |
1138589 |
tgaccgactcaattaacgttttctccaattgtcttgaatttacaactgctactaattttctgcatctcatgatcacgagatgaacg---gatttgtcatg |
1138685 |
T |
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| Q |
228 |
tgattgaatgataaatcattca |
249 |
Q |
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|||||||||||||||||||||| |
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| T |
1138686 |
tgattgaatgataaatcattca |
1138707 |
T |
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