View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0442_low_2 (Length: 593)

Name: NF0442_low_2
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0442_low_2
NF0442_low_2
[»] chr8 (3 HSPs)
chr8 (371-488)||(31372196-31372312)
chr8 (373-488)||(11659323-11659438)
chr8 (374-488)||(11668493-11668607)
[»] chr7 (4 HSPs)
chr7 (362-488)||(32248979-32249105)
chr7 (373-488)||(33426452-33426567)
chr7 (362-483)||(47815551-47815672)
chr7 (396-488)||(37504379-37504471)
[»] chr1 (4 HSPs)
chr1 (362-488)||(28851104-28851230)
chr1 (362-488)||(2170120-2170245)
chr1 (380-488)||(39482754-39482862)
chr1 (390-488)||(6844016-6844114)
[»] chr6 (1 HSPs)
chr6 (374-488)||(10460836-10460950)
[»] chr2 (2 HSPs)
chr2 (390-488)||(4867948-4868046)
chr2 (409-488)||(18751560-18751639)
[»] chr4 (1 HSPs)
chr4 (362-432)||(53239111-53239181)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 371 - 488
Target Start/End: Complemental strand, 31372312 - 31372196
Alignment:
Q  371 ccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacagatgaaacaagtaagtttgataggatttatagaatt 470  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  31372312 ccgtacactcatatatttgtatgtaccaatacttcaaactaaaatggccaatagttttttaacagatggaacaagtaagtttgatagga-ttatagaatt 31372214  T
Q  471 agcaccaccaaacttgtg 488  Q
    |||||||||||| |||||    
T  31372213 agcaccaccaaatttgtg 31372196  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 11659323 - 11659438
Alignment:
Q  373 gtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaatta 471  Q
    |||||||||||||||||||||||||||||||||||| |||||||  |||||| |||||||||| ||| ||||||||||| |||  ||| |||||||||||    
T  11659323 gtacactcatatatttgtatgtaccaatactccaaattaaaatggtcaatagatttttgacagcatggaacaagtaagtatgactgga-ttatagaatta 11659421  T
Q  472 gcaccaccaaacttgtg 488  Q
    |||||||||||||||||    
T  11659422 gcaccaccaaacttgtg 11659438  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 374 - 488
Target Start/End: Original strand, 11668493 - 11668607
Alignment:
Q  374 tacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattag 472  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| ||  ||||||||||| |||  ||| ||||||||||||    
T  11668493 tacacccatatatttgtatgtaccaatactccaaattaaaatggccaatagatttttgacagcatagaacaagtaagtatgactgga-ttatagaattag 11668591  T
Q  473 caccaccaaacttgtg 488  Q
    |||||||| |||||||    
T  11668592 caccaccagacttgtg 11668607  T

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Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 362 - 488
Target Start/End: Complemental strand, 32249105 - 32248979
Alignment:
Q  362 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggat 460  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||||||  |||     
T  32249105 ctccttctaccgtacacccatatatttgtatgtaccaatactccaaattaaaatgaccaatagttttttgatagcatggaacaagtaagtttgactgga- 32249007  T
Q  461 ttatagaattagcaccaccaaacttgtg 488  Q
    ||||||||||||||||||||||||||||    
T  32249006 ttatagaattagcaccaccaaacttgtg 32248979  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 33426452 - 33426567
Alignment:
Q  373 gtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaatta 471  Q
    |||||| |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||    
T  33426452 gtacacccatatatttgtatgtatcaatactccaaactaaaatggtcaatagttttttgacagcatggaacaagtaagtttgattgga-ttatagaatta 33426550  T
Q  472 gcaccaccaaacttgtg 488  Q
    |||||||||||||||||    
T  33426551 gcaccaccaaacttgtg 33426567  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 362 - 483
Target Start/End: Complemental strand, 47815672 - 47815551
Alignment:
Q  362 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgac-agatgaaacaagtaagtttgataggat 460  Q
    |||||||  |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||   ||     
T  47815672 ctccttctaccgtacacccatatatttgtatgtaacaatactccaaactaaaatggccaatagttttttgacaacatggaacaaataagtttga-ctgaa 47815574  T
Q  461 ttatagaattagcaccaccaaac 483  Q
    |||||||||||||||||||||||    
T  47815573 ttatagaattagcaccaccaaac 47815551  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 396 - 488
Target Start/End: Complemental strand, 37504471 - 37504379
Alignment:
Q  396 ccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 488  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||   || ||||||||||||||||||||||||||||    
T  37504471 ccaatactccaaattaaaatgacgaatagttttttgacagcatggaacaagtaagtttgagtaga-ttatagaattagcaccaccaaacttgtg 37504379  T

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Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 362 - 488
Target Start/End: Original strand, 28851104 - 28851230
Alignment:
Q  362 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggat 460  Q
    |||||||  |||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| |||||||||||||||  |||     
T  28851104 ctccttcttccgtacacccatatatttgtatgtaccaatactctagactaaaatggccaatagttttttgacagcatggaacaagtaagtttgactgga- 28851202  T
Q  461 ttatagaattagcaccaccaaacttgtg 488  Q
    ||||||||||||||||||||||||||||    
T  28851203 ttatagaattagcaccaccaaacttgtg 28851230  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 362 - 488
Target Start/End: Original strand, 2170120 - 2170245
Alignment:
Q  362 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggat 460  Q
    |||||||  |||||||| |||||||||||||||||||||||||| ||||||||||  |||||| |||||||||| ||| |||||||||||||||   ||     
T  2170120 ctccttctaccgtacacccatatatttgtatgtaccaatactcctaactaaaatggtcaatag-tttttgacagcatgcaacaagtaagtttga-ctgaa 2170217  T
Q  461 ttatagaattagcaccaccaaacttgtg 488  Q
    ||||||||||||||||||||||||||||    
T  2170218 ttatagaattagcaccaccaaacttgtg 2170245  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 488
Target Start/End: Complemental strand, 39482862 - 39482754
Alignment:
Q  380 catatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccac 478  Q
    |||| |||||||| || ||||||| |||| |||||||  ||||||||||||||||| |||||||||||||||||||   || |||||||||||||||||     
T  39482862 catacatttgtatatatcaatacttcaaattaaaatggtcaatagttttttgacagcatgaaacaagtaagtttgactcga-ttatagaattagcaccat 39482764  T
Q  479 caaacttgtg 488  Q
    ||||||||||    
T  39482763 caaacttgtg 39482754  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 6844114 - 6844016
Alignment:
Q  390 tatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 488  Q
    |||||| | ||||||||||| ||| |||||||||||||| |||||| ||| |||||||||||||||  ||| ||  ||| ||||||| ||||||||||||    
T  6844114 tatgtatcgatactccaaaccaaagtgaccaatagttttctgacagcatggaacaagtaagtttgactgga-ttgcagatttagcactaccaaacttgtg 6844016  T

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Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 374 - 488
Target Start/End: Original strand, 10460836 - 10460950
Alignment:
Q  374 tacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattag 472  Q
    ||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||| |||||||||||||||  ||| ||||||||||||    
T  10460836 tacacccatatatttgtatgtatcaatattccaaactaaaatggccaatagttttttgacagcatggaacaagtaagtttgactgga-ttatagaattag 10460934  T
Q  473 caccaccaaacttgtg 488  Q
    ||||||||||||||||    
T  10460935 caccaccaaacttgtg 10460950  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 488
Target Start/End: Complemental strand, 4868046 - 4867948
Alignment:
Q  390 tatgtaccaatactccaaactaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 488  Q
    |||||||| ||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||  ||| || |||| ||||||||||||||||||||    
T  4868046 tatgtaccgatactccaaaccaaaatgaccaatagttttctgacagtatggaacaagtaagtttgactgga-ttgtagatttagcaccaccaaacttgtg 4867948  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 488
Target Start/End: Complemental strand, 18751639 - 18751560
Alignment:
Q  409 ctaaaatgaccaatagttttttgacag-atgaaacaagtaagtttgataggatttatagaattagcaccaccaaacttgtg 488  Q
    |||||||| |||||||||||||||||| ||| |||||  ||||||||  ||| || || | ||||||||||||||||||||    
T  18751639 ctaaaatggccaatagttttttgacagcatggaacaaaaaagtttgactgga-ttgtaaatttagcaccaccaaacttgtg 18751560  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 362 - 432
Target Start/End: Original strand, 53239111 - 53239181
Alignment:
Q  362 ctccttccgccgtacactcatatatttgtatgtaccaatactccaaactaaaatgaccaatagttttttga 432  Q
    |||||||  |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  53239111 ctccttctaccgtacacccatatatttgtatgtaccaatactccaaactaaaatggtcaatagttttttga 53239181  T

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