View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0442_low_3 (Length: 538)
Name: NF0442_low_3
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0442_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 89 - 525
Target Start/End: Complemental strand, 41140451 - 41140011
Alignment:
| Q |
89 |
gctttttgattagctgagtcatgctaataagcaaccaattatgtgtttatgttcctcgtcagctcccatgtcttggttcccaaatgcttgcgtggagtgg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140451 |
gctttttgattagctgagtcatgctaataagcaaccaattatgtgtttatgttcctcgtcagctcccatgtcttggttcccaaatgcttgcgtggagtgg |
41140352 |
T |
|
| Q |
189 |
ggctataaatccatgcccattcaactaaacccacttatttttaattttataacaatatttaccatttcttttttggatcccattaaaaccaaaatacctt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140351 |
ggctataaatccatgcccattcaactaaacccacttatttttaattttataacaatatttaccatttcttttttggatcccattaaaaccaaaatacctt |
41140252 |
T |
|
| Q |
289 |
ctggagggtgtctcagaaagtttagtgtcagcacctttaatcattaacctaattaattaggtgaaatatagattatatatannnnnnnatataaatcgag |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41140251 |
ctggagggtgtctcagaaagtttagtgtcagcacctttaatcattaacctaattaattaggtgaaatatagattatatata-ttttttatataaatcgag |
41140153 |
T |
|
| Q |
389 |
tgt-----ttttatagattaattctacgagtcagagaaaattacaatcaacaacgtagttctttctcaaaagatttgacaccaacaaactttaattaagt |
483 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140152 |
tgtttaagttgtatagattaattctacgagtcagagaaaattacaatcaacaacgtagttctttctcaaaagatttgacaccaacaaactttaattaagt |
41140053 |
T |
|
| Q |
484 |
tgaaatacaaatcatctcaactagatgcagaaatatgaatat |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41140052 |
tgaaatacaaatcatctcaactagatgcagaaatatgaatat |
41140011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University