View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0442_low_5 (Length: 391)
Name: NF0442_low_5
Description: NF0442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0442_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 46863283 - 46863137
Alignment:
| Q |
39 |
catgggttcacgttcaccgccggtgtttataaagaaagagacaaaattggaatatgtagtgactagtgaggcagtgacgaggtttaaggttttatagttg |
138 |
Q |
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| T |
46863283 |
catgggttcacgttcaccgccggtgtttataaagaaagagacaaaattggagtatgtagtgactagtgaggcagtgacgaggtttaaggttttttagttg |
46863184 |
T |
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| Q |
139 |
ggaccaccaagtcaaaaccctagccacaactattacactatcctttc |
185 |
Q |
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| T |
46863183 |
ggaccaccaagtcaaaaccctagccacaactattacactatcctttc |
46863137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 46863140 - 46863050
Alignment:
| Q |
253 |
tttcatgttgtctttgagtacgattaaggaagagtttttattttctatcatattttataaatgggttaattaagtttgtgtttggttgagt |
343 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46863140 |
tttcatgttgtctttgggtacgattaaggaagagtttttattttctatcatattttataaatgggttaattaagtttgtgtttggttgagt |
46863050 |
T |
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