View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0443_high_1 (Length: 536)

Name: NF0443_high_1
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0443_high_1
NF0443_high_1
[»] chr7 (5 HSPs)
chr7 (1-459)||(6546-7003)
chr7 (455-526)||(8190-8261)
chr7 (314-443)||(47799254-47799383)
chr7 (347-414)||(48955189-48955256)
chr7 (347-441)||(27132173-27132268)
[»] chr1 (4 HSPs)
chr1 (313-526)||(42645329-42645546)
chr1 (352-436)||(14285832-14285916)
chr1 (347-440)||(30466876-30466969)
chr1 (375-443)||(1013389-1013458)
[»] chr8 (3 HSPs)
chr8 (389-526)||(33688782-33688923)
chr8 (376-439)||(42112454-42112517)
chr8 (379-443)||(28091441-28091506)
[»] chr5 (2 HSPs)
chr5 (347-414)||(5766811-5766878)
chr5 (357-410)||(43588336-43588389)
[»] chr3 (4 HSPs)
chr3 (347-414)||(20313378-20313445)
chr3 (313-443)||(49144731-49144861)
chr3 (375-443)||(42144431-42144500)
chr3 (379-443)||(49756341-49756406)
[»] chr4 (2 HSPs)
chr4 (357-443)||(1013368-1013454)
chr4 (375-411)||(17512157-17512193)
[»] chr6 (1 HSPs)
chr6 (347-428)||(21983238-21983319)
[»] chr2 (1 HSPs)
chr2 (357-410)||(2501801-2501854)


Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 6546 - 7003
Alignment:
Q  1 aaaaagacatatcttttcttaaagattggttacattgatggtccttttgaggaagtttctttgtaactacaaaagtttggatggnnnnnnngagaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||    
T  6546 aaaaagacatatcttttcttaaagattggttacattgatggtccttttgaggaagtttctttgtaactacaaaagtttggatggaaaaaaagagaaattt 6645  T
Q  101 tgttttgtaattccagaatccctgaaagctactttcatttctctctcgcccgccactaaggatagaaaatagaccatgttaggctgttatgaactttgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6646 tgttttgtaattccagaatccctgaaagctactttcatttctctctcgcccgccactaaggatagaaaatagaccatgttaggctgttatgaactttgct 6745  T
Q  201 taaataaattaggtatagttcaaaaattaaataagtctaacnnnnnnnnngagggaaattaagtctaacttattacattttagaggttttatttcaagtc 300  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6746 taaataaattaggtatagttcaaaaattaaataagtctaac-ttttttttgagggaaattaagtctaacttattacattttagaggttttatttcaagtc 6844  T
Q  301 tgatggtctagcggtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatctt 400  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  6845 tgatggtctagcggtggcatttagccggggtaagtgaggttttttttcatcatgggaaagttggattttcaccattagattaaagaggtgtattgatctt 6944  T
Q  401 atcatagtctacctgtactctattcatcttctagatctggaatcaaattaatcatccgc 459  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  6945 atcatagtctacctgtactctattcatcttctagatctagaatcaaattaatcttccgc 7003  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 455 - 526
Target Start/End: Original strand, 8190 - 8261
Alignment:
Q  455 tccgctctctttccatgtctcctccactcacccatcaccaccagacaaaagcatttgcttccatcctctctg 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8190 tccgctctctttccatgtctcctccactcacccatcaccaccagacaaaagcatttgcttccatcctctctg 8261  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 314 - 443
Target Start/End: Original strand, 47799254 - 47799383
Alignment:
Q  314 gtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacc 413  Q
    ||||||||||||| |||||||||| |       ||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  47799254 gtggcatttagcctgggtaagtgaagttttttcccatcatgggaaagtttgatttttaccattagattaaagaggtgtattgatcttatcatggtctacc 47799353  T
Q  414 tgtactctattcatcttctagatctggaat 443  Q
    || ||| |||||||| | ||||||| ||||    
T  47799354 tgcactttattcatcctttagatctagaat 47799383  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 48955256 - 48955189
Alignment:
Q  347 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacct 414  Q
    ||||||||| |||||| |||||| ||| | |||||||||||||||||||||||||| || ||||||||    
T  48955256 ccatcatgggaaagtttgatttttaccatcagattaaagaggtgtattgatcttataatggtctacct 48955189  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 441
Target Start/End: Complemental strand, 27132268 - 27132173
Alignment:
Q  347 ccatcatggaaaagttggattttc-accgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctgga 441  Q
    ||||||||| ||||||| |||||  ||| ||||||||||| |||||| || ||||||||| ||||| ||||| | |||||||| ||||| ||||||    
T  27132268 ccatcatgggaaagttgaattttttaccattagattaaagtggtgtactggtcttatcatggtctatctgtattttattcatcatctagctctgga 27132173  T

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Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 313 - 526
Target Start/End: Original strand, 42645329 - 42645546
Alignment:
Q  313 ggtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctac 412  Q
    |||||||||||||| ||||||||||||        |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  42645329 ggtggcatttagcctgggtaagtgaggttttttctcatcgtgggaaagttggattttcaccattagattaaagaggtgtattgatcttatcatagtttac 42645428  T
Q  413 ctgtactctattcatcttctagatctggaatcaaattaat----catccgctctctttccatgtctcctccactcacccatcaccaccagacaaaagcat 508  Q
    |||||||||||||||||||||||||||||| |||| ||||    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42645429 ctgtactctattcatcttctagatctggaagcaaaataatcttccgtccgctctctttccatgtctcctccactcacccatcaccaccatacaaaagcat 42645528  T
Q  509 ttgcttccatcctctctg 526  Q
    ||||||||||||||||||    
T  42645529 ttgcttccatcctctctg 42645546  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 14285916 - 14285832
Alignment:
Q  352 atggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagat 436  Q
    ||||||||||  |||||| ||| |||||||||| ||||||||||| |||||||| |||||||| |||| || ||||| |||||||    
T  14285916 atggaaaagtcagatttttaccattagattaaacaggtgtattgaacttatcatggtctacctatactttaatcatcctctagat 14285832  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 30466969 - 30466876
Alignment:
Q  347 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctgg 440  Q
    ||||||||| ||||||| ||||| ||| |||||||||||  ||||| || |||||||||  |||||||||| | |||||||| ||||| |||||    
T  30466969 ccatcatgggaaagttgaatttttaccattagattaaagtagtgtactggtcttatcatgatctacctgtattttattcatcctctagctctgg 30466876  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 443
Target Start/End: Complemental strand, 1013458 - 1013389
Alignment:
Q  375 ttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 443  Q
    ||||||||| ||||| ||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  1013458 ttagattaatgaggtctattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 1013389  T

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Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 389 - 526
Target Start/End: Complemental strand, 33688923 - 33688782
Alignment:
Q  389 tgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaatcaaattaatcatccg----ctctctttccatgtctcctccactca 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    | ||||||||||||||||||||||||    
T  33688923 tgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaatcaaaataatcttccgcccaccctctttccatgtctcctccactca 33688824  T
Q  485 cccatcaccaccagacaaaagcatttgcttccatcctctctg 526  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  33688823 cccatcaccaccacacaaaagcatttgcttccatcctctctg 33688782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 42112517 - 42112454
Alignment:
Q  376 tagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctg 439  Q
    |||||||||||||||||||||||||| ||| |||||||| |||| |||||||| ||||||||||    
T  42112517 tagattaaagaggtgtattgatcttaccatggtctacctatactttattcatcatctagatctg 42112454  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 28091441 - 28091506
Alignment:
Q  379 attaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 443  Q
    ||||| ||||||||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  28091441 attaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 28091506  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 5766878 - 5766811
Alignment:
Q  347 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacct 414  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| || ||||||||    
T  5766878 ccatcatgggaaagttggatttttaccatcagattaaagaggtgtattgatcttataatggtctacct 5766811  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 43588336 - 43588389
Alignment:
Q  357 aaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtct 410  Q
    |||||| |||||| ||| ||||||||||||||| ||||||||||||||| ||||    
T  43588336 aaagttagatttttaccattagattaaagaggtctattgatcttatcatggtct 43588389  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 20313445 - 20313378
Alignment:
Q  347 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacct 414  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||| || ||||||||    
T  20313445 ccatcatgggaaaattggatttttaccattagattaaagaggtgtattgatcttataatggtctacct 20313378  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 443
Target Start/End: Original strand, 49144731 - 49144861
Alignment:
Q  313 ggtggcatttagccggggtaagtgaggnnnnnnnccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctac 412  Q
    ||||||||||||||  ||||||||| |       ||| ||| ||||||||| ||||| | | |||||||||||||||||||||||| |||||| |||||     
T  49144731 ggtggcatttagcctaggtaagtgaagttttttcccaacatagaaaagttgaatttttatcattagattaaagaggtgtattgatcatatcatggtctat 49144830  T
Q  413 ctgtactctattcatcttctagatctggaat 443  Q
    ||  ||  |||||||| ||||||||| ||||    
T  49144831 ctacacattattcatcctctagatctagaat 49144861  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 375 - 443
Target Start/End: Original strand, 42144431 - 42144500
Alignment:
Q  375 ttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 443  Q
    ||||||||| ||||||||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  42144431 ttagattaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 42144500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 49756341 - 49756406
Alignment:
Q  379 attaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttct-agatctggaat 443  Q
    ||||| ||||||||||||||||||||| ||| |||  |||| |||||||| ||| |||||||||||    
T  49756341 attaatgaggtgtattgatcttatcatggtccacccatactttattcatcctctaagatctggaat 49756406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 443
Target Start/End: Original strand, 1013368 - 1013454
Alignment:
Q  357 aaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatcttctagatctggaat 443  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||  || |||  |||||||| ||||||||||||||    
T  1013368 aaagttggatttttaccattagattaaagagctgtattgatcttaccatggtctttctatacattattcatcctctagatctggaat 1013454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 17512193 - 17512157
Alignment:
Q  375 ttagattaaagaggtgtattgatcttatcatagtcta 411  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  17512193 ttagattaaagaggtgtattgattttatcatggtcta 17512157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 21983319 - 21983238
Alignment:
Q  347 ccatcatggaaaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtctacctgtactctattcatc 428  Q
    ||||||||| ||| ||| ||||  ||| ||||||||||||||||||||||||||||||| |||||||| || | ||||||||    
T  21983319 ccatcatgggaaatttgaatttctaccattagattaaagaggtgtattgatcttatcatggtctacctatattttattcatc 21983238  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 2501801 - 2501854
Alignment:
Q  357 aaagttggattttcaccgttagattaaagaggtgtattgatcttatcatagtct 410  Q
    ||||||| ||||| ||| || ||||||| |||||||||||||||||||| ||||    
T  2501801 aaagttgaatttttaccatttgattaaaaaggtgtattgatcttatcatggtct 2501854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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