View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0443_high_12 (Length: 252)
Name: NF0443_high_12
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3773297 - 3773549
Alignment:
| Q |
1 |
gttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatgatgaaaattcaattcttgttggatgggatgaggatctgagtttctgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3773297 |
gttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatgatgaaaattcaattcttgttggatgggatgaagatctgagtttctgaaa |
3773396 |
T |
|
| Q |
101 |
tcgaaacaaccaggcaaatagagaagatgaaaggttcctttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaac |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3773397 |
tcgaaacaaccaggaaaatagagaagatgaaaggttcttttttgaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaac |
3773496 |
T |
|
| Q |
201 |
ttttaaatctcagcc-------ttgatctaatggttatgtttgttcatctcac |
246 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
3773497 |
ttttaaatctcagccacttgttttgatctaatggttatgtttgttcctctcac |
3773549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 44943462 - 44943248
Alignment:
| Q |
1 |
gttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatgatgaaaattcaattcttgttggatgggatgaggatctgagtttctgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44943462 |
gttgtggtttattcaaaattcaatttattatagaaaaccaataactgaatgatgaaaattcaattcttgttggatgggatgaggatctgagtttctgaaa |
44943363 |
T |
|
| Q |
101 |
tcgaaacaaccaggcaaatagagaagatgaaaggttcctttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44943362 |
tcgaaacaaccaggcaaatagagaagatgaaaggttcttttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaac |
44943263 |
T |
|
| Q |
201 |
ttttaaatctcagcc |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
44943262 |
ttttaaatctcagcc |
44943248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 22966573 - 22966360
Alignment:
| Q |
1 |
gttgtggtttattcaaaattcaatttattatagaaaaccaataattgaatgatgaaaattcaattcttgttggatgggatgaggatctgagtttctgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22966573 |
gttgtggtttattcaaaattcaatttattatagaaaaccaataactgaatgatgaaaattcaattcttgttggatgggatgaggatctgagtttctgaaa |
22966474 |
T |
|
| Q |
101 |
tcgaaacaaccaggcaaatagagaagatgaaaggttcctttttaaaaagaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22966473 |
tcgaaacaaccaggcaaatagagaagatgaaaggtt-cttttaaaatggaagagaagatgaaggtcaacaatttagagcacgtgacttttaaaatggaac |
22966375 |
T |
|
| Q |
201 |
ttttaaatctcagcc |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22966374 |
ttttaaatctcagcc |
22966360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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