View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0443_high_14 (Length: 250)
Name: NF0443_high_14
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_high_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 4884387 - 4884166
Alignment:
| Q |
29 |
agttcttttgtataattttgagggtttgttcatcactagtgttttggttttggttcaaataaggcaagaaatatgtaaaggtttgaatttatttattttg |
128 |
Q |
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| T |
4884387 |
agttcttttgtataattttgagggtttgttcatcactagtgttttggttttggttcaaataaggcaagaaatatgtaaaggtttgaatttatttattttg |
4884288 |
T |
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| Q |
129 |
gtttttaatggatgatgaagcttaaaagttgaagtgcacatggaaagataaaaactattgagagaagagatcaaatgattggaatacaggagaaaagnnn |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4884287 |
gtttttaatggatgatgaagcttaaaagttgaagtgcacatggaaagataaaaactattgagagaagagatcaaatgattggaatacaggagaaaagaaa |
4884188 |
T |
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| Q |
229 |
nnnnggatgccattactattgt |
250 |
Q |
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|||||||||||||||||| |
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| T |
4884187 |
aaaaggatgccattactattgt |
4884166 |
T |
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