View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0443_low_12 (Length: 347)
Name: NF0443_low_12
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 84 - 333
Target Start/End: Complemental strand, 36945643 - 36945394
Alignment:
| Q |
84 |
taatgcagaaagataacacaatgacaaaattatcttgtactaagcatttaggttggaaaagttataaggaaagaagagaagcgtgacctgttgggtgagg |
183 |
Q |
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| T |
36945643 |
taatgcagaaagataacacaatgacaaaattatcttgcactaagcatttaggttggaaaagttataaggaaagaagagaagcatgacctgttgggtgagg |
36945544 |
T |
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| Q |
184 |
tatatgcaaaatcaatccaagacagaccattccaaaacaaaatccttccatcagcaacaccggtgtaagggccacgaccatgagaatcgaaggcaatgct |
283 |
Q |
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| T |
36945543 |
tatatgcaaaatcaatccaagacagtccattccaaaacaaaatccttccatcagcaacaccggtgtaagggccacgaccatgagaatcgaaggcaatgct |
36945444 |
T |
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| Q |
284 |
ctccggtccctgcacttggttcacaaacatgagctccgatttctgcaaca |
333 |
Q |
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| T |
36945443 |
ctccggtccctgcacttggttcacaaacatgagctccgatttcagcaaca |
36945394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 36945726 - 36945681
Alignment:
| Q |
28 |
cacatatatcccatactaatatgcttgcactattagagtatgacta |
73 |
Q |
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| T |
36945726 |
cacatttatcccatactaataagcttgcactattagagtatgacta |
36945681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 169 - 333
Target Start/End: Original strand, 17769858 - 17770022
Alignment:
| Q |
169 |
acctgttgggtgaggtatatgcaaaatcaatccaagacagaccattccaaaacaaaatccttccatcagcaacaccggtgtaagggccacgaccatgaga |
268 |
Q |
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| T |
17769858 |
acctgttgggcgaagtgtaagcaaagtcaacccaagaaagtccattccagaacaaaattctaccatcagcaacaccagtataaggaccacgaccaagagg |
17769957 |
T |
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| Q |
269 |
atcgaaggcaatgctctccggtccctgcacttggttcacaaacatgagctccgatttctgcaaca |
333 |
Q |
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|| || |||||||||| ||||| || |||||||||| |||| | | ||| ||||| ||||||| |
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| T |
17769958 |
gtcaaacacaatgctctcaggtccttgtacttggttcaaaaaccttatctctgatttttgcaaca |
17770022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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