View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0443_low_14 (Length: 287)
Name: NF0443_low_14
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_low_14 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 44 - 259
Target Start/End: Original strand, 90935 - 91150
Alignment:
| Q |
44 |
cacagacccaaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagag |
143 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
90935 |
cacagacccaaatgatccaatgattgagttcatgtcaagagagtgccaaagagctcaaaaagcatctgctataattttgaacacatttgatgctttagag |
91034 |
T |
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| Q |
144 |
catgatgttttggaagcattctcttcaacttttcctcctatcttttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaact |
243 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
91035 |
catgatgttttggaagcattctcttcaatttttcctcctatctattccattggccccttaaatttactcttgaaagatgtgaccaatgaagaattgaact |
91134 |
T |
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| Q |
244 |
caatagggtccaacct |
259 |
Q |
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|||||||||||||||| |
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| T |
91135 |
caatagggtccaacct |
91150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 26672664 - 26672492
Alignment:
| Q |
87 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaacttttcctcctatct |
186 |
Q |
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|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| | ||| |||||| | | |
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| T |
26672664 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26672565 |
T |
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| Q |
187 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacct |
259 |
Q |
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| T |
26672564 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacct |
26672492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 26944262 - 26944090
Alignment:
| Q |
87 |
tgccaaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctcttcaacttttcctcctatct |
186 |
Q |
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|||||||||||||||||||||||||| |||||||| || |||||||| ||| || || ||||||||||||||||||||||| | ||| |||||| | | |
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| T |
26944262 |
tgccaaagagctcaaaaagcatctgcaataattttcaacacatttgacaatttggaacacgatgttttggaagcattctcttccattttacctcctgttt |
26944163 |
T |
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| Q |
187 |
tttccattggtcccttaaatttactcttgaaaaaggtgaccaatgaagaattgaactcaatagggtccaacct |
259 |
Q |
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| T |
26944162 |
attccattggtcccttgcatttactcataaaagatgtgacaaataaggaattggattcaattgggtccaacct |
26944090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 26901953 - 26901877
Alignment:
| Q |
90 |
caaagagctcaaaaagcatctgctataattttgaatacatttgatgctttagagcatgatgttttggaagcattctc |
166 |
Q |
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|||||||||| |||||| || || |||||||| || ||||||||||| ||||| || | ||||| ||||||||||| |
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| T |
26901953 |
caaagagctctaaaagcttcagcaataattttaaacacatttgatgcattagaacacaacgttttagaagcattctc |
26901877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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