View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0443_low_18 (Length: 256)
Name: NF0443_low_18
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3773175 - 3772950
Alignment:
| Q |
1 |
atttttaatttgattattttttaactgtgatagttttt--ccaataaaaatagaaaatgcatatattcattnnnnnnnnnnnnntcaacccaaaaacgca |
98 |
Q |
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| T |
3773175 |
atttttaattcgattattttttaactgtgatgttttttttccagtaaaaatagaaaatgcatatattcattaaaaacaaaaaaatcaacccaaaaacgcg |
3773076 |
T |
|
| Q |
99 |
gcgaggaggagaattcaatcaagaaacccagaaacgttggtgtaagatgtcgcagaaccacgtcttcgcctttgcataacgtttacgctgtcgtagcctc |
198 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3773075 |
gcgaggaggagaattcaatcaagaaatccagaaacgttggtgtaagatgtcgcagaaccacgtctttgcctttgcataacgtttacgctgtcgtagcctc |
3772976 |
T |
|
| Q |
199 |
cgacctcaaaaaactcatcatcatct |
224 |
Q |
| |
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|||||||| |||||||||||| |||| |
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| T |
3772975 |
cgacctcacaaaactcatcattatct |
3772950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 44943585 - 44943808
Alignment:
| Q |
1 |
atttttaatttgattattttttaactgtgatagtttttccaataaaaatagaaaatgcatatattcattnnnnnnnnnnnnntcaacccaaaaacgcagc |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |
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| T |
44943585 |
atttttaattcgattattttttaactgtgatggtttttccaataaaagtagaaaatgcatatattcattaaaaacaaaaaaatcaacccaaaaacgcggc |
44943684 |
T |
|
| Q |
101 |
gaggaggagaattcaatcaagaaacccagaaacgttggtgtaagatgtcgcagaaccacgtcttcgcctttgcataacgtttacgctgtcgtagcctccg |
200 |
Q |
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| T |
44943685 |
gaggaggagaattcaatcaagaaacccagaaacgttgca-taacgta----agaaccacgtcttcgcctttgcataacgtttacgttgtcgtagcctccg |
44943779 |
T |
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| Q |
201 |
acctcaaaaaactcatcatcatctgtctg |
229 |
Q |
| |
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|||||| ||||| |||||||||||||||| |
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| T |
44943780 |
acctcacaaaacccatcatcatctgtctg |
44943808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 22966696 - 22966919
Alignment:
| Q |
1 |
atttttaatttgattattttttaactgtgatagtttttccaataaaaatagaaaatgcatatattcattnnnnnnnnnnnnntcaacccaaaaacgcagc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| || |
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| T |
22966696 |
atttttaattcgattattttttaactgtgatggtttttctaataaaagtagaaaatgcatatattcattaaaaacaaaaaaatcaacccaaaaacgcggc |
22966795 |
T |
|
| Q |
101 |
gaggaggagaattcaatcaagaaacccagaaacgttggtgtaagatgtcgcagaaccacgtcttcgcctttgcataacgtttacgctgtcgtagcctccg |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22966796 |
gaggaggagaattcaatcaagaaacccagaaacgttgca-taacgta----agaaccacgtcttcgcctttgcataacgtttacgttgtcgtagcctccg |
22966890 |
T |
|
| Q |
201 |
acctcaaaaaactcatcatcatctgtctg |
229 |
Q |
| |
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|||||| ||||| |||||||||||||||| |
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| T |
22966891 |
acctcacaaaacccatcatcatctgtctg |
22966919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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