View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0443_low_19 (Length: 255)

Name: NF0443_low_19
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0443_low_19
NF0443_low_19
[»] chr5 (2 HSPs)
chr5 (10-242)||(16042948-16043178)
chr5 (1-49)||(15617705-15617753)
[»] scaffold0112 (1 HSPs)
scaffold0112 (1-98)||(34061-34158)
[»] chr8 (5 HSPs)
chr8 (1-228)||(41418186-41418410)
chr8 (203-242)||(26131526-26131565)
chr8 (1-107)||(26131359-26131465)
chr8 (186-242)||(43218414-43218470)
chr8 (89-232)||(13172924-13173067)
[»] chr7 (3 HSPs)
chr7 (1-235)||(8789959-8790190)
chr7 (1-242)||(44036737-44036975)
chr7 (1-106)||(40290235-40290340)
[»] chr4 (1 HSPs)
chr4 (1-242)||(51748576-51748817)
[»] scaffold0093 (2 HSPs)
scaffold0093 (19-98)||(16847-16926)
scaffold0093 (183-232)||(16716-16765)
[»] chr2 (1 HSPs)
chr2 (130-248)||(17118884-17119002)
[»] chr3 (1 HSPs)
chr3 (186-241)||(20251149-20251204)
[»] chr1 (1 HSPs)
chr1 (198-242)||(26264151-26264195)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 16042948 - 16043178
Alignment:
Q  10 caccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatcagacgacaacca 109  Q
    ||||||||||||||||||||||||  ||||| |||||||| ||  ||||||||||||| | ||| ||    || || |  ||||||||| |||| ||| |    
T  16042948 caccttattgaggattggtatgcaactaacgttactattccagtagctagtcgcaaca-cgcataaaattttttagttcataatgatcaaacga-aacga 16043045  T
Q  110 caacactgctaagccatgacgattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcaggtggcagcgtccataacgaga 209  Q
    |||||||| || | || ||||||||| ||||||||||| || |||||||||||||||||   | |||||||||||||||||||||||||||| || |||     
T  16043046 caacactggtaggacaagacgattcaggtacaactccagatccttctactacaacaacgaatgatatagctttggtcaggtggcagcgtccacaatgagt 16043145  T
Q  210 ccgtctgaaatgtaatgttgatgcttcattttc 242  Q
     |||||||||| |||||| ||| ||||||||||    
T  16043146 tcgtctgaaatataatgtcgatacttcattttc 16043178  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15617705 - 15617753
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattc 49  Q
    ||||||||||||| ||| ||||||||||||| || ||| ||||||||||    
T  15617705 cgagcttgtcaccatatggaggattggtatgtagctaatgctactattc 15617753  T

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Target: scaffold0112 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34061 - 34158
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatca 98  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| |  ||||||||||||||||| ||||||||||||| ||||||||||||    
T  34061 cgagcttgtcaccttatggaggattggtatgcagttaacgttactattctggcagctagtcgcaacaacacttcaacaaattcagtttgtaatgatca 34158  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41418410 - 41418186
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatcaga 100  Q
    ||||||||||||||||| |||||||||||||||| |||| |||||||||  |  |||||| |||||||||| ||||||||||||| | ||||||||||||    
T  41418410 cgagcttgtcaccttatggaggattggtatgcagctaacactactattccggcagctagttgcaacaacacttcaacaaattcagttcgtaatgatcaga 41418311  T
Q  101 cgacaaccacaacactgctaagccatgacgattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcaggtggcagcgtcc 200  Q
     |||||| ||||| | | |||| ||    | |||||||||||||| ||||||||||  |||||| ||    | |||  ||| ||||||||||||||| ||    
T  41418310 tgacaacaacaacgccggtaagacaaagtggttcatgtacaactcgaaattcttctgatacaacgac---tgatatgtcttcggtcaggtggcagcggcc 41418214  T
Q  201 ataacgagaccgtctgaaatgtaatgtt 228  Q
    | ||| || ||||| |||||||||||||    
T  41418213 acaacaaggccgtccgaaatgtaatgtt 41418186  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 26131526 - 26131565
Alignment:
Q  203 aacgagaccgtctgaaatgtaatgttgatgcttcattttc 242  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  26131526 aacgaggccgtctgaaatgtaatgttgatgcttcattttc 26131565  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 26131359 - 26131465
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatcaga 100  Q
    ||||||||||||||||| ||||||||| |||||| |||  ||||| |||  |  |||||||| |||||||  |||| |||||||| |  |||||||||||    
T  26131359 cgagcttgtcaccttatggaggattggcatgcagctaatcctactcttccggtagctagtcgaaacaacatttcaataaattcagttcataatgatcaga 26131458  T
Q  101 cgacaac 107  Q
    | |||||    
T  26131459 caacaac 26131465  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 43218470 - 43218414
Alignment:
Q  186 caggtggcagcgtccataacgagaccgtctgaaatgtaatgttgatgcttcattttc 242  Q
    ||||||||| |||||| | |||| || |||||||||||||||||||| |||||||||    
T  43218470 caggtggcaacgtccacagcgagtccatctgaaatgtaatgttgatgtttcattttc 43218414  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 13172924 - 13173067
Alignment:
Q  89 gtaatgatcagacgacaaccacaacactgctaagccatgacgattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcag 188  Q
    |||||||| |||||||||| |||||||   |||| || |  |||| | ||||||||| ||||||||||  || | ||||| | | ||| | |||||||||    
T  13172924 gtaatgattagacgacaacaacaacaccagtaagacaaggtgattaaggtacaactcaaaattcttctcttatagcaacgagtgatatggttttggtcag 13173023  T
Q  189 gtggcagcgtccataacgagaccgtctgaaatgtaatgttgatg 232  Q
    |||||| || | | |||| |  ||||||||||||||||||||||    
T  13173024 gtggcaacgccaacaacgtggtcgtctgaaatgtaatgttgatg 13173067  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8789959 - 8790190
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatcaga 100  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||  |  |||||||  |||||| | ||||||||||||| | |||| |||||||    
T  8789959 cgagcttgtcaccttatggaggattggtatgcagctaacgctactattccggcagctagtcataacaacgcttcaacaaattcagttcgtaacgatcaga 8790058  T
Q  101 cgacaaccacaacactgctaagccatgacgattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcaggtggcagcgtcc 200  Q
     || ||| ||||| | | |||| ||    | |||| ||| ||||| |||||||||| ||   |||||| | | |||  ||| ||||||||||||||| ||    
T  8790059 tgagaacaacaacgccggtaagacacagtggttcaggtataactcgaaattcttctgct---acaacgagtgatatgacttcggtcaggtggcagcggcc 8790155  T
Q  201 ataacgagaccgtctgaaatgtaatgttgatgctt 235  Q
    | ||| || |||||||||||||||||| |||||||    
T  8790156 acaacaaggccgtctgaaatgtaatgtcgatgctt 8790190  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44036975 - 44036737
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatcaga 100  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||| |   |  ||||||||||||||||  ||||||||||||| |  |||||||||||    
T  44036975 cgagcttgtcaccttatggaggattgatatgcagttaaccctactacttcggcagctagtcgcaacaacatttcaacaaattcagttcataatgatcaga 44036876  T
Q  101 cgacaaccacaacactgctaagccatgacgattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcaggtggcagcgtcc 200  Q
     ||| || |||||   |  ||| ||    | |||| ||| ||||| |||||||||| ||   |||||| | | |||  ||| |||||||||| |||| ||    
T  44036875 tgacgacaacaacgtcggaaagacaaagtggttcaggtataactcgaaattcttctgct---acaacgagtgatatgacttcggtcaggtggaagcggcc 44036779  T
Q  201 ataacgagaccgtctgaaatgtaatgttgatgcttcattttc 242  Q
    | |||||| |||||||||||||||| | |||||||| |||||    
T  44036778 acaacgaggccgtctgaaatgtaatatcgatgcttcgttttc 44036737  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 40290340 - 40290235
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagt-cgcaacaacacatcaacaaattcagcttgtaatgatcag 99  Q
    |||||||||||||||||||||||||| ||||||| ||| || |||||||  |   ||||| | ||||||||||| ||||||||||| |||| ||||||||    
T  40290340 cgagcttgtcaccttattgaggattgatatgcagctaatgcaactattccggcaactagtccacaacaacacataaacaaattcagtttgt-atgatcag 40290242  T
Q  100 acgacaa 106  Q
    || ||||    
T  40290241 actacaa 40290235  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 51748576 - 51748817
Alignment:
Q  1 cgagcttgtcaccttattgaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatcaga 100  Q
    |||| |||||||||||| ||||||||  |||||| |||||||||| ||   |  || ||||| |||||||  |||| |||||||| | ||||||||| |     
T  51748576 cgagtttgtcaccttatggaggattgacatgcagctaacgctactctttcggtagccagtcgaaacaacatttcaataaattcagttcgtaatgatcggt 51748675  T
Q  101 cgacaaccacaacactgctaagccatgacgattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcaggtggcagcgtcc 200  Q
    ||||||| | || |  | |||| || ||| ||| |  |||||||| || ||||||| ||||||||||| | | ||| ||||  | |||||||||||||||    
T  51748676 cgacaacaataatatcgataagacaagacaatttagttacaactcgaatttcttcttctacaacaacgagtgatatggcttcagacaggtggcagcgtcc 51748775  T
Q  201 ataacgagaccgtctgaaatgtaatgttgatgcttcattttc 242  Q
    | |||||| | || ||||||||||||||||||||||||||||    
T  51748776 acaacgaggctgtatgaaatgtaatgttgatgcttcattttc 51748817  T

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Target: scaffold0093 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 16926 - 16847
Alignment:
Q  19 gaggattggtatgcagttaacgctactattctagatgctagtcgcaacaacacatcaacaaattcagcttgtaatgatca 98  Q
    |||||||||||||||| ||||| ||||||||  |  ||||||||||||||||| ||||||||||||| | ||||||||||    
T  16926 gaggattggtatgcagctaacgttactattccggcagctagtcgcaacaacacttcaacaaattcagttcgtaatgatca 16847  T

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Target: scaffold0093; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 16765 - 16716
Alignment:
Q  183 ggtcaggtggcagcgtccataacgagaccgtctgaaatgtaatgttgatg 232  Q
    ||||||||||||||| ||| ||| || |||||||||||||||||| ||||    
T  16765 ggtcaggtggcagcggccacaacaaggccgtctgaaatgtaatgtcgatg 16716  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 17118884 - 17119002
Alignment:
Q  130 gattcatgtacaactccaaattcttctactacaacaacgggaggtatagctttggtcaggtggcagcgtccataacgagaccgtctgaaatgtaatgttg 229  Q
    |||||| ||||||||| |||||||| | |||||  |||  | | ||| | || ||||||||||||||||||| || ||| |||||||||||||||||| |    
T  17118884 gattcaggtacaactcaaaattcttttcctacagtaacaagtgatattgtttcggtcaggtggcagcgtccacaatgaggccgtctgaaatgtaatgtcg 17118983  T
Q  230 atgcttcattttcatatca 248  Q
    ||||||| |||||| ||||    
T  17118984 atgcttcgttttcagatca 17119002  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 20251149 - 20251204
Alignment:
Q  186 caggtggcagcgtccataacgagaccgtctgaaatgtaatgttgatgcttcatttt 241  Q
    ||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||    
T  20251149 caggtggcaacgtccacaacgtggccgtctgaaatgtaatgttgatgcttcatttt 20251204  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 26264195 - 26264151
Alignment:
Q  198 tccataacgagaccgtctgaaatgtaatgttgatgcttcattttc 242  Q
    |||| ||||||  ||||||||||||||||||||||||||||||||    
T  26264195 tccacaacgaggtcgtctgaaatgtaatgttgatgcttcattttc 26264151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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