View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0443_low_4 (Length: 424)
Name: NF0443_low_4
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 45382977 - 45383371
Alignment:
| Q |
1 |
tacttttactcgttaacaatgagaaaagactcgtgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgtcatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45382977 |
tacttttacttgttaacaatgagaaaagactcttgaagtgaataattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgttatt |
45383076 |
T |
|
| Q |
101 |
tcttgaagtgtgtcatccctagttagcatttaatcttctctcaatcaaaatggctcatttgataaatgaaaatagaaaatgtgtttacgaagtaaataga |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45383077 |
tcttgaaatgtgtcatccctagttagcatttaatcttctctcaatcaaaatggctcatttgataaatgaaaatagaaaacgtgtttacgaagtaaataga |
45383176 |
T |
|
| Q |
201 |
cccttaaataacacatttgataaatatgttacaatagaagataagaaaagtaatttattttaatttcatgaaaagtaaaactgatttgaggtggactgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45383177 |
cccttaaataacacatttgataaatatgttacaatagaagataagaaaagtaatttattttaatttcatgaaaagtaaaactgatttgaggtggactgag |
45383276 |
T |
|
| Q |
301 |
atggatggtcggttgatgaaacgcaactgaggacgatggctgagctctttggcaggggtgttgtatatgcaaacactaaacgctcaagtcagtttt |
396 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45383277 |
atcgatggtcggttgatgaaacgcaactgaggacgatggctgagctctttggcaggggtgttgtatatgcaaacact-aacgctcaagtcagtttt |
45383371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 16265516 - 16265448
Alignment:
| Q |
24 |
aaaagactcgtgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctatttt |
92 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| | || | |||||||||||||||| ||| ||||||||| |
|
|
| T |
16265516 |
aaaagactcttgaagtgaacatttgtcttgcatttccagaaacaatgaaaatgtcaaaatagctatttt |
16265448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1486 times since January 2019
Visitors: 3230