View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0443_low_6 (Length: 351)
Name: NF0443_low_6
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 89 - 253
Target Start/End: Complemental strand, 34060093 - 34059934
Alignment:
| Q |
89 |
agatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgatgattggttgattttatcgaagtctgtcnnnnnnnnnn |
188 |
Q |
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| T |
34060093 |
agatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgatgattggttgattttatcgaagtatgt-----aaaaaa |
34059999 |
T |
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| Q |
189 |
nncagctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaacgcga |
253 |
Q |
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| T |
34059998 |
aacagctatactaggtagcatgcactgttgtactgctcttttagagttggaaactatgaacgcga |
34059934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 22232170 - 22232261
Alignment:
| Q |
91 |
atcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgtt---------ttctgtgatgattggttgattttatcgaagt |
173 |
Q |
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| T |
22232170 |
atcaacatagccttgaaacttgtctctcaatctctgaattgaatctaccgtttgctgcagattttgtgatgattggttgattttatcgaagt |
22232261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 22232275 - 22232332
Alignment:
| Q |
192 |
agctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaac |
249 |
Q |
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| T |
22232275 |
agctacacttggcagcatgcattgttgtcctgctcttttggaattggaaactatgaac |
22232332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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