View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0443_low_9 (Length: 350)
Name: NF0443_low_9
Description: NF0443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0443_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 87 - 252
Target Start/End: Complemental strand, 34060095 - 34059934
Alignment:
| Q |
87 |
acagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgatgattggttgattttatcgaagtctgtcnnnnnnnn |
186 |
Q |
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| T |
34060095 |
acagatcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgttttctgtgatgattggttgattttatcgaagtatgt----aaaaa |
34060000 |
T |
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| Q |
187 |
nnncagctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaacgcga |
252 |
Q |
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| T |
34059999 |
aaacagctatactaggtagcatgcactgttgtactgctcttttagagttggaaactatgaacgcga |
34059934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 22232170 - 22232261
Alignment:
| Q |
91 |
atcaaaattgccttgaaacttaactctcaatctctgaattgaatcaactgtt---------ttctgtgatgattggttgattttatcgaagt |
173 |
Q |
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| T |
22232170 |
atcaacatagccttgaaacttgtctctcaatctctgaattgaatctaccgtttgctgcagattttgtgatgattggttgattttatcgaagt |
22232261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 22232275 - 22232332
Alignment:
| Q |
191 |
agctatactaggaagcatgcactgttgtactgctcttttagagttggaaactatgaac |
248 |
Q |
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| T |
22232275 |
agctacacttggcagcatgcattgttgtcctgctcttttggaattggaaactatgaac |
22232332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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