View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0444_high_3 (Length: 490)
Name: NF0444_high_3
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 36 - 490
Target Start/End: Complemental strand, 2017006 - 2016552
Alignment:
| Q |
36 |
acagacaagttaacattgcagttaatttgcaccaacaaatgagatatttgaaatagaatgcaaacaacatggcgaagccttaaaccttacaccaagtcat |
135 |
Q |
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| T |
2017006 |
acagacaagttaacattgcagttaatttgcaccaacaaatgagatatttgaaacagaatgcaaacaacatggcgaagccttaaaccttacaccaagtcat |
2016907 |
T |
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| Q |
136 |
taacatatccgaaatgtagcaaattagaattcaaaatccgacttagttgcattgcatgcattgaaccaaagatgtgttgaatgatgcttactttctcaat |
235 |
Q |
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| T |
2016906 |
taacatatccgaaatgtagcaaattagaattcaaaatccgacttagttgcattgtatgcattgaaccaaagatgtgttgaatgatgcttactttctcaat |
2016807 |
T |
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| Q |
236 |
tgccacaacatgaccaagactacaaagcgcagacaaggaatgaagaatgcagacaatacctcctccggtcatttttataagagacgaatagatcaataaa |
335 |
Q |
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| T |
2016806 |
tgccacaacatgaccaagactacaaagcgcagacaaggaatgaagaatgcagacaatacctcctccagtcatttttataagagacgaatagatcaataaa |
2016707 |
T |
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| Q |
336 |
attgatgtatttggtctatataagaaccaattacatcaacttttattgactcatttgtcacttctaaaaaggtccatagggagtacaatagtaaactcaa |
435 |
Q |
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| T |
2016706 |
attgatgtatttggtctatataagaaccaattacatcaacttttatcgactcatttgtcacttataaaaaagtccagagggagtacaatagtaaactcaa |
2016607 |
T |
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| Q |
436 |
actagtgattaattaattaaaaggtatttgcatacaaaatgatttcacttgcaga |
490 |
Q |
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| T |
2016606 |
attagtgattaattaattaaaaggtatttgcatacaaaatgatttcacttgcaga |
2016552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 2015174 - 2015061
Alignment:
| Q |
185 |
cattgcatgcattgaaccaaagatgtgttgaatgatgcttactttctcaattgccacaac---atgaccaagactacaaagcgcagacaaggaatg-aag |
280 |
Q |
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| T |
2015174 |
cattacatgcattgaaccaaagaagccctgaatgattcttactttctcgattgccaaaacacgaggaccaagactactaagtgtagacaaggtatgaaaa |
2015075 |
T |
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| Q |
281 |
aatgcagacaatac |
294 |
Q |
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| T |
2015074 |
aatgcagacaatac |
2015061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 297 - 420
Target Start/End: Original strand, 30443733 - 30443858
Alignment:
| Q |
297 |
cctccggtcatttttataagagacgaatagatcaataaaa-ttgatgtatttggtctatataa-gaaccaattacatcaacttttattgactcatttgtc |
394 |
Q |
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| T |
30443733 |
cctcccgtcttttttataagaaacaaatgggtcaacaaaagttaatgtatttggtctatattatgaaccaaatacatcaactttagttgaccaatttgtc |
30443832 |
T |
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| Q |
395 |
acttctaaaaaggtccatagggagta |
420 |
Q |
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| T |
30443833 |
tcttgtaaaaaggaccggagggagta |
30443858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 407
Target Start/End: Original strand, 3938333 - 3938404
Alignment:
| Q |
337 |
ttgatgtatttggtctata-taagaaccaattacatcaacttttattgactcatttgtcacttctaaaaagg |
407 |
Q |
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| T |
3938333 |
ttgatgtatttggtctttattatgaaccaaatacatcaatttttaatgactcatttctctcttataaaaagg |
3938404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 48050972 - 48051033
Alignment:
| Q |
359 |
gaaccaattacatcaacttttattgactcatttgtcacttctaaaaaggtccatagggagta |
420 |
Q |
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| T |
48050972 |
gaaccaaatacatcaactttagttgaccaatttgtctcttataaaaaggaccatagggagta |
48051033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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