View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0444_high_8 (Length: 284)
Name: NF0444_high_8
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 48593582 - 48593338
Alignment:
| Q |
30 |
attggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48593582 |
attggccctaggagcagtcaatccaggccgttcatccatatcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaag |
48593483 |
T |
|
| Q |
130 |
cattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaact |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593482 |
cattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaact |
48593383 |
T |
|
| Q |
230 |
ggtgccctttcatgtcaatatctttgttttctaaaaacctctctg |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48593382 |
ggtgccctttcatgtcaatatctttgttttctaaaaacctttctg |
48593338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 48598193 - 48597949
Alignment:
| Q |
30 |
attggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48598193 |
attggccctaggagcagtcaatccaggccgttcatccatatcaatttttttgccttgatctaagatcttacattccgaatcaagcatcttccactcaaag |
48598094 |
T |
|
| Q |
130 |
cattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaact |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48598093 |
cattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaact |
48597994 |
T |
|
| Q |
230 |
ggtgccctttcatgtcaatatctttgttttctaaaaacctctctg |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
48597993 |
ggtgccctttcatgtcaatatctttgttttctaaaaacctttctg |
48597949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 23222922 - 23223119
Alignment:
| Q |
30 |
attggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaag |
129 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| | |||| ||| || ||||||||||||||||||||| |
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| T |
23222922 |
attggctctaggagcagtcaatccaggccgttcatccatatcgattgttttgccttgatctaataatttaccttcagagtcaagcatcttccactcaaag |
23223021 |
T |
|
| Q |
130 |
cattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaa |
227 |
Q |
| |
|
|||||||| ||||| ||||| ||||| || |||| || | |||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23223022 |
cattgtactaaagctccaatcacagtcggcaattcgcgcatggccaaaggcatccccgggcaacctctccttccagaaccaaatggcaacaactcaaa |
23223119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 23230667 - 23230879
Alignment:
| Q |
30 |
attggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaag |
129 |
Q |
| |
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|||||| |||||||| ||||||||||| | |||||||||||| | |||| ||||||| || |||| ||| || |||||||| |||||||||||| |
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| T |
23230667 |
attggctctaggagcggtcaatccaggtctttcatccatatcgattgttttgcctcgatctaatattttaccttcggagtcaagcattttccactcaaag |
23230766 |
T |
|
| Q |
130 |
cattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaact |
229 |
Q |
| |
|
||||| |||||||| || | ||| ||||| ||||| || | |||||| ||||||||||| || ||||||||||||||||||||||| | ||||||| | | |
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|
| T |
23230767 |
cattgcaccaaagccccgactacggtgggcaattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtagcaactcatagt |
23230866 |
T |
|
| Q |
230 |
ggtgccctttcat |
242 |
Q |
| |
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| ||||||||||| |
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|
| T |
23230867 |
gatgccctttcat |
23230879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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