View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0444_low_1 (Length: 579)
Name: NF0444_low_1
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Complemental strand, 32112799 - 32112331
Alignment:
| Q |
30 |
gttctcgtgtccttcctggataatt-gacagtctcaaacgttccaccattatccagaaatatgtccttgcgaattctgttggatgttctgtctggtctct |
128 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32112799 |
gttcttgtgtccttcctggataatttgacagtctcaaacgttccaccattatccagaaatatgtccttgcgaattctgttggacgttctgtctggtctct |
32112700 |
T |
|
| Q |
129 |
tctcattccctacaatcagccaacaagattccattttcttgacctcatctttggttgttctaattgtttaccttcttgtttaatccttctaatcttgatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32112699 |
tctcattccctacaatcagccaacaagattccattttcttgacctcatctttggttgttctaattgtttaccttcttgtttaatccttctaaccttgatt |
32112600 |
T |
|
| Q |
229 |
cagaatactttatgtccaatatgttaaacagccttgatcttatggtcacagaccatactttcagccatatcttctgtataactggattgtatttgttttt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32112599 |
cagaatactttatgtccaatatgttaaacagccttgatcttatggtcacagaccatactttcagccatatcttctgtataactggattgtatttgttttt |
32112500 |
T |
|
| Q |
329 |
agaaatagcataacagnnnnnnnngcaactctaagtgtttatacttaactcatgtgtctggaaaattataaaatcacagggtttagggggttaaattgag |
428 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32112499 |
agaaatagcataacagttttttttgcaactctaagtgtttatacttaactcatgtgtctggaaaattataaaatcacagggtttagggggttaaattgag |
32112400 |
T |
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| Q |
429 |
caaataatagaagatatgttatgcaaagtgataatactttaaattaataatgacattggctttgatgat |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32112399 |
caaataatagaagatatgttatgcaaagtgataatactttaaattaataatgacattggcttcgatgat |
32112331 |
T |
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