View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0444_low_16 (Length: 266)
Name: NF0444_low_16
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 51762034 - 51762200
Alignment:
| Q |
30 |
aactcttgtattaacggtttgaacagaagtgatgctgaaaagaaggtgaagttggaggtgaaaagaaaagttaccgatgcatctatgtttataagtaacg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51762034 |
aactcttgtattaacggtttgaacagaagcgatgctgaaaagaaggtgaagttggaggtgaaaagaaaagttaccgatgcatctatgtttataagtaacg |
51762133 |
T |
|
| Q |
130 |
ctctctacttgatcaatcgtcttggggaaagcatgaatcataagcctcactccaattccaataactg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
51762134 |
ctctctacttgatcaatcgtcttggggaaagcatgaatcaaaagcctcactccaattccaataactg |
51762200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1344 times since January 2019
Visitors: 3228