View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0444_low_18 (Length: 243)
Name: NF0444_low_18
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_low_18 |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 7848381 - 7848605
Alignment:
| Q |
21 |
catcatcatagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcct |
120 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7848381 |
catcatcatagaaaccatcggcatcatgaaaatacatcatcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcct |
7848480 |
T |
|
| Q |
121 |
catcatttgtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatt--taaaaaatatatataaaatctaagaccttttta |
218 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||| |
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| T |
7848481 |
cgtcatttgcatagaaaaacaaacagattgatgactcttgacaacaatatagaagtggatttattaaaaaaaaatgtatataaaatctaagacattttta |
7848580 |
T |
|
| Q |
219 |
atacttcttagaataccactatagc |
243 |
Q |
| |
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||| ||||||||||||||||||||| |
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|
| T |
7848581 |
atatttcttagaataccactatagc |
7848605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 14745570 - 14745678
Alignment:
| Q |
21 |
catcatcatagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcct |
120 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||||| | |
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| T |
14745570 |
catcatcatagaaaacatcctcatcatgatcatacatcgtcattcacaccacatattttaatcaacatcattattctcatcatcaagcaattttaagcat |
14745669 |
T |
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| Q |
121 |
catcatttg |
129 |
Q |
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| ||||||| |
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| T |
14745670 |
cgtcatttg |
14745678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 22396545 - 22396448
Alignment:
| Q |
21 |
catcatcatagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagc |
118 |
Q |
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||||||| ||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||||| |
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| T |
22396545 |
catcatcgtagaaaacatcctcatcatgaacatacatcgccattcacaccacatattttaatcaacatcattattttcatcatgaaacaattttaagc |
22396448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 6821376 - 6821600
Alignment:
| Q |
21 |
catcatcatagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcct |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6821376 |
catcatcataaaaaacatcggcatcatgaaaatacattgtcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcct |
6821475 |
T |
|
| Q |
121 |
catcatttgtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatttaaaaaata--tatataaaatctaagaccttttta |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||| |||||| |
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| T |
6821476 |
catcatttacttagaaaaacaaacagattgatgactcttgacaacaatatagaagtggatttattcaaaaaaaaataatataaaatctaagacattttta |
6821575 |
T |
|
| Q |
219 |
atacttcttagaataccactatagc |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
6821576 |
atacttcttagaataccactatagc |
6821600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 35922490 - 35922277
Alignment:
| Q |
21 |
catcatcatagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaagcct |
120 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
35922490 |
catcatcatagaatacatcggcatcatgaaaatacatcgtcatttacaccgcaaattttaattgacatcattattcacatcatcaaacaattttaagcct |
35922391 |
T |
|
| Q |
121 |
catcatttgtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttatttaaaaaatatatataaaatctaagacctttttaat |
220 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||| | |||||||||||||||| ||||||| |
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| T |
35922390 |
cgtcatttgcatagaaaaacaaacagattgatgacttttgtcaacaatatagaagtggatttattcgaaaaaaagatataaaatctaagacatttttaa- |
35922292 |
T |
|
| Q |
221 |
acttcttagaataccac |
237 |
Q |
| |
|
||||||||||||||| |
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| T |
35922291 |
--ttcttagaataccac |
35922277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 22521674 - 22521729
Alignment:
| Q |
62 |
attcacaccacaaattttaatcgacatcattattctcatcatcaaactattttaag |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||||| | | |||||||| |
|
|
| T |
22521674 |
attcacaccacaaattttaatcaacatcagtattcacatcatcgagcaattttaag |
22521729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 19019751 - 19019845
Alignment:
| Q |
21 |
catcatcatagaaaacatcggcatcatgaaaatacatcctcattcacaccacaaattttaatcgacatcattattctcatcatcaaactatttta |
115 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | |||||| |
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| T |
19019751 |
catcatcatagagaacatcgttatcatgaacatacatcgtcattcacaccacaaattttaatcaacattattattctcatcatcaagcaatttta |
19019845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 126 - 243
Target Start/End: Complemental strand, 45564825 - 45564710
Alignment:
| Q |
126 |
tttgtatagaaaaacaaacagattgatgactcttgacaacaatatagtagtggatttat-ttaaaaaatatatataaaatctaagacctttttaatactt |
224 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||| || ||||||| ||||| |||||||||||| |
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|
| T |
45564825 |
tttgcatagaaaaacaaacagattgacgactcttggcaacagtatagaagtggatttatcctaaaaaaaat---taaaatcgaagacatttttaatactt |
45564729 |
T |
|
| Q |
225 |
cttagaataccactatagc |
243 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
45564728 |
cttagaacaccactatagc |
45564710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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