View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0444_low_2 (Length: 499)
Name: NF0444_low_2
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 30 - 486
Target Start/End: Original strand, 8169518 - 8169974
Alignment:
| Q |
30 |
tggacgagtattagcttgcaaccttaccaaatcaggaaagtcttggaatacacaagacaaaagaatcttcactgctttgctagctacaccttggccccaa |
129 |
Q |
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| T |
8169518 |
tggacgagtattagcctgcaaccttaccaaatcaggaaagtcttggaatacacaagacaaaagaatcttcactgctttggtggctacaccttggccccaa |
8169617 |
T |
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| Q |
130 |
tagttgaacccaatagcataacctaaatctgctttaaactttgcatcaggataaggaaggacaaaaacaattccaatagagtgatcattaagacatattg |
229 |
Q |
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| T |
8169618 |
tagttaaacccaatagcataacctaaatctgctttaaactttgcatcaggataaggaaggacaaaaacaattccaatagagtgatcattaagacatattg |
8169717 |
T |
|
| Q |
230 |
attgttggaatgggtaaatgcaatcattttttatgaaattcaaagcttgttcccttgatttacataactccaatcgcatatattgcatgactctttcatc |
329 |
Q |
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| T |
8169718 |
attgttggaatgggtaaatgcaatcattttttatgaaattcgaagcttgttcccttgatttacataactccaatcgcatatattgcatgactctttcatc |
8169817 |
T |
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| Q |
330 |
acttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtaatccttgactcatgatctattgccatgaccaaaatatgttgatga |
429 |
Q |
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| T |
8169818 |
acttgcccacaataacacatcgtcagcatcactttctttgaatggccggagagtaatccttgactcatgatctattgccatgaccaaaatatgttgatga |
8169917 |
T |
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| Q |
430 |
tggctaagatattttggtatttatataccaaaagtgaatggttagaatgattgatct |
486 |
Q |
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| T |
8169918 |
tggctaagatattttggtatttatataccaaaagtgaatggttagaatgattgatct |
8169974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 38 - 475
Target Start/End: Original strand, 8172157 - 8172593
Alignment:
| Q |
38 |
tattagcttgcaaccttaccaaatcaggaaagtcttggaatacacaagacaaaagaatcttcactgctttgctagctacaccttggccccaatagttgaa |
137 |
Q |
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||||||| ||||||||| ||| |||||||| |||||||| || | ||||||||||||||| | |||||| | |||| ||||||||||||||| ||||| |
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| T |
8172157 |
tattagcctgcaacctttgcaagtcaggaaactcttggaacactcgagacaaaagaatcttaagtgcttttgtggctataccttggccccaataattgaa |
8172256 |
T |
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| Q |
138 |
cccaatagcataacctaaatctgctttaaactttgcatcaggataaggaaggacaaaaacaattccaatagagtgatcattaagacatattgattgttgg |
237 |
Q |
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| T |
8172257 |
tccaatagcaaaacctaaatctgctttaaactttgcataagaaattggaagaacaaaaacaattccaatagagtgatcatcaagacatattgattgttgg |
8172356 |
T |
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| Q |
238 |
aatgggtaaatgcaatcattttttatgaaattcaaagcttgttcccttgatttacataactccaatcgcatatattgcatgactctttcatcacttgccc |
337 |
Q |
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| T |
8172357 |
aatgggtaaatacaatctttctttatgaaattcaaagcttgttcccttgatttacataacttcaatcgtgtatattgcatgactctttcatcacttgccc |
8172456 |
T |
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| Q |
338 |
acaataacacatcgtcagcatcactttctttgaatggccggagagtaatccttgactcatgatctattgccatgaccaaaatatgttgatgatggctaag |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||| |
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| T |
8172457 |
acaataacacatcgtcagcatcactttctttgaatggccggagagtgatccttgactcatgatctattgccatgaccacaatatgttaat-atggctaag |
8172555 |
T |
|
| Q |
438 |
atattttggtatttatataccaaaagtgaatggttaga |
475 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||| |
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| T |
8172556 |
atattttggtatttatacaccaaaagtgtgtggttaga |
8172593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 36 - 277
Target Start/End: Original strand, 8177108 - 8177352
Alignment:
| Q |
36 |
agtattagcttgcaaccttaccaaatcaggaaagtcttggaatacacaagacaaaagaatcttcactgctttgctagctacaccttggccccaatagttg |
135 |
Q |
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||||| ||||||||||||| |||||| || || || ||||| || |||| ||||||||||||||| || | || | ||||| |||||||||||| |
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| T |
8177108 |
agtataagcttgcaaccttctcaaatctgggaactcatggaacacttttgacagaagaatcttcactgcattagtggcaatcccttgaccccaatagttg |
8177207 |
T |
|
| Q |
136 |
aacccaatagcataacctaaatctgctttaaactttgcatca---ggataaggaaggacaaaaacaattccaatagagtgatcattaagacatattgatt |
232 |
Q |
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|| |||||||||||||| | |||||||||| | || ||||| | || |||||| | |||| |||||||| ||||| |||| |||||||||||||| |
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| T |
8177208 |
aatccaatagcataacccatatctgctttatatttctcatcattagcatgaggaagaatccaaaccattccaatggagtggtcatcaagacatattgatt |
8177307 |
T |
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| Q |
233 |
gttggaatgggtaaatgcaatcattttttatgaaattcaaagctt |
277 |
Q |
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| T |
8177308 |
ggcggattgggtaaatgcattcattttttatgaaatccaaagctt |
8177352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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