View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0444_low_8 (Length: 398)
Name: NF0444_low_8
Description: NF0444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0444_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 45382144 - 45382475
Alignment:
| Q |
11 |
cagagatataacaaacggtaaacacatccatgagatgcttctagcccctaccttgcataattatacataattgtttgtgagttgtaaacacaaaacgata |
110 |
Q |
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| T |
45382144 |
cagagatataacaaatggtaaacacatccatgag----------cccctaccttgcataattatacataattgttagtgagttgtaaacacaaaacgata |
45382233 |
T |
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| Q |
111 |
aatttgacaggggagaagaaattgaaatcgatacttgggtggatgcagcaggaaagaatggaatgcgaagagattggataatccgagatcgttgtaccaa |
210 |
Q |
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| T |
45382234 |
aatttgacaggggagaagaaattgaaatcgatacttgggtggatgcagcaggaaagaatggaatgcgaagagattggataatccgagatcgttgtaccaa |
45382333 |
T |
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| Q |
211 |
agagatcataactaaagcaacaaggtgcattatttcatatacttttttatgcatccaaaatatgttatgatttataataccaaataatatgttaatagga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45382334 |
agagatcataactaaagcaacaaggtgcattatttcatatacttttttatgcatccaaaatatgttatgatttataataccaaataatatgttaatagga |
45382433 |
T |
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| Q |
311 |
aactttgtctttgatacagcacatgggtgataatgaatagag |
352 |
Q |
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| T |
45382434 |
aactttgtctttgatacagcacatgggtgataatgaatagag |
45382475 |
T |
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