View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445-Insertion-1 (Length: 742)

Name: NF0445-Insertion-1
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445-Insertion-1
NF0445-Insertion-1
[»] chr8 (28 HSPs)
chr8 (11-742)||(6364089-6364815)
chr8 (217-445)||(7460584-7460812)
chr8 (219-468)||(6275645-6275894)
chr8 (217-361)||(6353596-6353740)
chr8 (180-359)||(6392094-6392274)
chr8 (219-474)||(6290391-6290646)
chr8 (217-455)||(6425192-6425430)
chr8 (219-488)||(6333053-6333322)
chr8 (175-359)||(6411258-6411442)
chr8 (219-469)||(6322505-6322755)
chr8 (217-361)||(6371300-6371444)
chr8 (11-110)||(6290726-6290825)
chr8 (11-115)||(7460966-7461070)
chr8 (231-361)||(6264927-6265057)
chr8 (11-115)||(6353956-6354060)
chr8 (15-110)||(6275978-6276073)
chr8 (643-742)||(6353293-6353392)
chr8 (22-110)||(6333403-6333491)
chr8 (22-110)||(6392437-6392525)
chr8 (22-110)||(6411577-6411665)
chr8 (15-110)||(6322953-6323048)
chr8 (11-110)||(6425506-6425605)
chr8 (228-358)||(6458262-6458392)
chr8 (670-736)||(7460197-7460263)
chr8 (9-110)||(6371533-6371634)
chr8 (228-353)||(6452174-6452299)
chr8 (675-742)||(6424967-6425034)
chr8 (25-112)||(6265475-6265562)
[»] chr5 (1 HSPs)
chr5 (220-362)||(9603035-9603177)
[»] chr2 (3 HSPs)
chr2 (223-355)||(42694394-42694526)
chr2 (11-109)||(42686807-42686905)
chr2 (228-355)||(42687136-42687263)
[»] chr3 (2 HSPs)
chr3 (223-358)||(36743886-36744021)
chr3 (285-353)||(35722304-35722372)


Alignment Details
Target: chr8 (Bit Score: 650; Significance: 0; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 11 - 742
Target Start/End: Complemental strand, 6364815 - 6364089
Alignment:
Q  11 gatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364815 gatgttccaaaccatggaaccatcaactttgtttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 6364716  T
Q  111 gaatatttataaaatatatccaacatgtatgtataacttgttaaatannnnnnnagaataaaaattctcttttccaaaaacttgacacaatcaatgacta 210  Q
    ||||||||||||| ||||||||||||||||    |||||||||||||       ||| || |||||||||||||||||||||||||||||||||||||||    
T  6364715 gaatatttataaattatatccaacatgtat----aacttgttaaatatttttttagactataaattctcttttccaaaaacttgacacaatcaatgacta 6364620  T
Q  211 caattttgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364619 caattttgtagacataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcg 6364520  T
Q  311 taaggaatgggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364519 taaggaatgggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagc 6364420  T
Q  411 accctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataaactttatgttctatcttaacacttgagtatgttatatttta 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  6364419 accctcccttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttat-aactttacgttctatcttaacacttgagtatgttatatttta 6364321  T
Q  511 agaaattctggcaaaaattaagtgatatggtactaaaatatgaaattgtattctacttgacaactaatgtttttatccctgatgttgtttactaagtctt 610  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6364320 agaaattctggcaaaaattaagtgatatggtactaaaatgtgaaattgtattctacttgacaactaatgtttttatccctgatgttgtttactaagtctt 6364221  T
Q  611 tttgttgatacaaatgtttactctgcttatgattctaaaacatacattgttattgtatttgtgaacagatcctacgagtgagagtcgaagtgacactgtt 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6364220 tttgttgatacaaatgtttactctgcttatgattctaaaacatacattgttattgtatttgtgaacagatcctaagagtgagagtcgaagtgacactgtt 6364121  T
Q  711 tacctcccaagagatgaatcacttggacacac 742  Q
    ||||||||||||||||||||| ||||||||||    
T  6364120 tacctcccaagagatgaatcatttggacacac 6364089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 217 - 445
Target Start/End: Complemental strand, 7460812 - 7460584
Alignment:
Q  217 tgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaagga 316  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  7460812 tgtagacataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaagga 7460713  T
Q  317 atgggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctc 416  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||   ||| |||| ||||| |||||||||||||||| ||||||| || | | | |     
T  7460712 atgggacagaatatatgattatgatgtctacaatgacttgggtgatcccgaccagaaagctagcttggctcgtcctgttgctggaggacctggaaacttg 7460613  T
Q  417 ccttaccctcgaagagggagaaccggcag 445  Q
    |||||||||||||| || |||||||||||    
T  7460612 ccttaccctcgaaggggaagaaccggcag 7460584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 219 - 468
Target Start/End: Complemental strand, 6275894 - 6275645
Alignment:
Q  219 tagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaat 318  Q
    |||||||| |||||||||||||||||| |||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||    
T  6275894 tagacatatcttccaagtgaaacaccacctccattagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaat 6275795  T
Q  319 gggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctccc 418  Q
    ||||||| || ||||| || ||||||||||||||| ||||||||   |||||||| || || ||||||||||| ||| |||||||||| | |||| | ||    
T  6275794 gggaaaggatctatgactacgatgtctacaatgatgtgggtgatcctgacaagaaagcaagcttggctcgtcccgttattggaggatccaacaccttgcc 6275695  T
Q  419 ttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttata 468  Q
    ||||||||||||||||||||||||||||||| |||||   ||||||||||    
T  6275694 ttaccctcgaagagggagaaccggcaggaaaccagctaagaaaggttata 6275645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 217 - 361
Target Start/End: Complemental strand, 6353740 - 6353596
Alignment:
Q  217 tgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaagga 316  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6353740 tgtagacataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaagga 6353641  T
Q  317 atgggaaagaatatatgattatgatgtctacaatgatttgggtga 361  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  6353640 atgggaaagaatatatgattacgatgtctacaatgatttgggtga 6353596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 180 - 359
Target Start/End: Complemental strand, 6392274 - 6392094
Alignment:
Q  180 ttttccaaaaacttgaca-caatcaatgactacaattttgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattg 278  Q
    |||| ||||||||||||| ||  |||||  || |||||||||| ||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  6392274 tttttcaaaaacttgacagcacccaatggttaaaattttgtaggcataccttctaagggaaacaccagctccattactgtactacagacaagaagaattg 6392175  T
Q  279 aagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgggt 359  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6392174 aatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttgggt 6392094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 219 - 474
Target Start/End: Complemental strand, 6290646 - 6290391
Alignment:
Q  219 tagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaat 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  6290646 tagacataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaat 6290547  T
Q  319 gggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctccc 418  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    |||  |||  ||   ||||| ||||   || |||| ||||| ||||   ||||    
T  6290546 gggaaagaatatatgattacgatgtctacaatgatttaggtgagcctgactcgaaacctcaattggcgcgtcaaattcttgggggatcgagcaatttccc 6290447  T
Q  419 ttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataaacttt 474  Q
    |||||||||||| || |||||||||||| || |||||   ||||||||||||||||    
T  6290446 ttaccctcgaaggggaagaaccggcagggaaccagctaagaaaggttataaacttt 6290391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 217 - 455
Target Start/End: Complemental strand, 6425430 - 6425192
Alignment:
Q  217 tgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaagga 316  Q
    |||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||||||||||||||||||||  |||||||| |||||    
T  6425430 tgtagacataccttccaagtgaaacaccggctccattggtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaagga 6425331  T
Q  317 atgggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctc 416  Q
    ||||||||| || |||||||| |||||||||||||||||||||||    |||  |||  |||  |||| |||||| ||| |||||||||| |||||| |     
T  6425330 atgggaaaggatctatgattacgatgtctacaatgatttgggtgagcctgactcgaaacctaccttgggtcgtccagttcttggaggatcgagcaccttg 6425231  T
Q  417 ccttaccctcgaagagggagaaccggcaggaaagcagct 455  Q
    |||||||||||||| |||||||| ||||| ||| |||||    
T  6425230 ccttaccctcgaagggggagaacaggcagaaaaccagct 6425192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 219 - 488
Target Start/End: Complemental strand, 6333322 - 6333053
Alignment:
Q  219 tagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaat 318  Q
    ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||    
T  6333322 tagacgtaccttccaagcgaaacaccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaat 6333223  T
Q  319 gggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctccc 418  Q
     ||| || || ||||| || ||||| |||||||| |||||||||   |||||||| |  || ||||||||||| |||||||||||||| |  | | | ||    
T  6333222 cggataggatctatgactacgatgtttacaatgacttgggtgatcctgacaagaaagaaagcttggctcgtcccgttgttggaggatccaataacttgcc 6333123  T
Q  419 ttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataaactttatgttctatcttaa 488  Q
    |||||||||||| ||||||||||||||||||   |||   |||||| |||||||||||| ||||||||||    
T  6333122 ttaccctcgaagggggagaaccggcaggaaacatgctaaaaaaggtgataaactttatgctctatcttaa 6333053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 175 - 359
Target Start/End: Complemental strand, 6411442 - 6411258
Alignment:
Q  175 ttctcttttccaaaaacttgacacaatcaatgactacaattttgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaaga 274  Q
    ||||||||| |||||||||||||  | |||||  || |||| ||||| |||||||||||||| || |||||   || |||||||||||||   |||||||    
T  6411442 ttctctttttcaaaaacttgacagcaccaatggttaaaattatgtaggcataccttccaagtcaagcaccacaaccattagtgtactacatcaaagaaga 6411343  T
Q  275 attgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttgggt 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  6411342 attgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttgggt 6411258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 219 - 469
Target Start/End: Complemental strand, 6322755 - 6322505
Alignment:
Q  219 tagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaat 318  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||  |||| ||||||     
T  6322755 tagacataccttccaagtgaaacaccagctccattagtctactatagagaagaagaattgaagactttaagaggagatggaacgggtcagcgcaaggaac 6322656  T
Q  319 gggaaagaatatatgattatgatgtctacaatgatttgggtgatgtggacaagaacgctagtttggctcgtcctgttgttggaggatctagcaccctccc 418  Q
      || ||||| ||||| || ||||| |||||||| |||||||||   |||||| ||||    ||||||||||| ||| ||||||||||   |||| | ||    
T  6322655 acgatagaatctatgactacgatgtttacaatgacttgggtgatcctgacaagtacgcacacttggctcgtcccgttattggaggatccgacaccttgcc 6322556  T
Q  419 ttaccctcgaagagggagaaccggcaggaaagcagctcgtaaaggttataa 469  Q
    |||||||||||| || ||||||||||||||| |||||   |||||||||||    
T  6322555 ttaccctcgaaggggcagaaccggcaggaaaccagctaaaaaaggttataa 6322505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 217 - 361
Target Start/End: Complemental strand, 6371444 - 6371300
Alignment:
Q  217 tgtagacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaagga 316  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| || ||    
T  6371444 tgtagacataccttctaagtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaaga 6371345  T
Q  317 atgggaaagaatatatgattatgatgtctacaatgatttgggtga 361  Q
    |||||| || || ||||| || |||||||||||||||||||||||    
T  6371344 atgggataggatctatgactacgatgtctacaatgatttgggtga 6371300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 6290825 - 6290726
Alignment:
Q  11 gatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||    
T  6290825 gatgttcccaaccatggaaccatcaactttgtttgcaactcatggatttacaatgctcaaaactacaaaactgaacgcatcttctttgccaacaaggtaa 6290726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 7461070 - 7460966
Alignment:
Q  11 gatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||| || ||||  ||||||| ||||||||  | ||||| |||||||||||||||||||    
T  7461070 gatgttccaaaccatggaaccatcaactttgtttgcaactcatggattcacaattctaaaaagtacaaaacggaccgcatcttctttgccaacaaggtaa 7460971  T
Q  111 gaata 115  Q
    |||||    
T  7460970 gaata 7460966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 231 - 361
Target Start/End: Complemental strand, 6265057 - 6264927
Alignment:
Q  231 ccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatat 330  Q
    |||||||||||||| |||||  | || ||||| ||||||  ||| |||||||||||||||||||||||||| || ||||| || |||||||| ||| | |    
T  6265057 ccaagtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagttt 6264958  T
Q  331 atgattatgatgtctacaatgatttgggtga 361  Q
    ||||||||||||| |||||||||||||||||    
T  6264957 atgattatgatgtttacaatgatttgggtga 6264927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 6354060 - 6353956
Alignment:
Q  11 gatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||||||||||||||||| ||||| ||||| | |||||||||||| |||||||  ||||||| ||||||||  | ||||| |||||||||||||||||||    
T  6354060 gatgttccaaaccatggatccatccactttgtctgcaactcatggatttacaattctaaaaagtacaaaaccgaccgcatcttctttgccaacaaggtaa 6353961  T
Q  111 gaata 115  Q
    |||||    
T  6353960 gaata 6353956  T

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Target: chr8; HSP #16
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 6276073 - 6275978
Alignment:
Q  15 ttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||| ||||||||||||||||||||| |||||||||||||| |||||||   |  ||| ||||||||| |||||||||||||||||||||||||||    
T  6276073 ttcctaaccatggaaccatcaactttgtttgcaactcatggatttacaattgtcgaaagtacaaaactgaacgcattttctttgccaacaaggtaa 6275978  T

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Target: chr8; HSP #17
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 643 - 742
Target Start/End: Complemental strand, 6353392 - 6353293
Alignment:
Q  643 ttctaaaacatacattgttattgtatttgtgaacagatcctacgagtgagagtcgaagtgacactgtttacctcccaagagatgaatcacttggacacac 742  Q
    |||||||||||| ||||||||| ||| | ||||||||||||| |||||||| |||||||  |||||||||||| ||||||||||||||  ||||||||||    
T  6353392 ttctaaaacatatattgttattatatatttgaacagatcctaagagtgagactcgaagtcccactgtttaccttccaagagatgaatcttttggacacac 6353293  T

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Target: chr8; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 6333491 - 6333403
Alignment:
Q  22 ccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||| || ||||| |||||||| |||||| | ||||||||||    
T  6333491 ccatggaaccatcaactttgtttgcaactcatggatttacaatgctaaaaagtataaaacgaaacgcatcttctttacgaacaaggtaa 6333403  T

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Target: chr8; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 6392525 - 6392437
Alignment:
Q  22 ccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    ||||| |||||  |||||| |||||||||||||| ||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||||    
T  6392525 ccatgaaaccacaaactttatttgcaactcatggatttacaatgctgaaaagtaccaaactgaacgcattttctttgccaacaaggtaa 6392437  T

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Target: chr8; HSP #20
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 6411665 - 6411577
Alignment:
Q  22 ccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    ||||| |||||  |||||| |||||||||||||| ||||||| ||| |||| ||| ||||| |||||||||||||||||||||||||||    
T  6411665 ccatgaaaccacaaactttatttgcaactcatggatttacaatgctgaaaagtaccaaactgaacgcattttctttgccaacaaggtaa 6411577  T

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Target: chr8; HSP #21
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 6323048 - 6322953
Alignment:
Q  15 ttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||  ||| | || || ||||| |||||||| ||||| |||||||||||||    
T  6323048 ttccaaaccatggaaccatcaactttgtatgcaactcatggatttacagtgctgacaagtataaaacgaaacgcatcttcttcgccaacaaggtaa 6322953  T

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Target: chr8; HSP #22
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 6425605 - 6425506
Alignment:
Q  11 gatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaa 110  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||| |  ||||| ||||||| | | ||||| || || || ||||||||||    
T  6425605 gatgttccaaaccatggaaccatcaactttgtttgcaactcttgggtttacaatgacaaaaaatacaaaagtgaccgcatctttttcgctaacaaggtaa 6425506  T

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Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 228 - 358
Target Start/End: Complemental strand, 6458392 - 6458262
Alignment:
Q  228 cttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaa 327  Q
    ||||||||| ||||||||||||| |||    | || ||| ||||||| ||| ||||| ||||||||||||||||||||||||| || |||  ||| |||     
T  6458392 cttccaagtcaaacaccagctccattaaatcattatagagaagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggatagag 6458293  T
Q  328 tatatgattatgatgtctacaatgatttggg 358  Q
    | |||||||||||| | || |||||||||||    
T  6458292 tttatgattatgatatttataatgatttggg 6458262  T

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Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 670 - 736
Target Start/End: Complemental strand, 7460263 - 7460197
Alignment:
Q  670 tgtgaacagatcctacgagtgagagtcgaagtgacactgtttacctcccaagagatgaatcacttgg 736  Q
    ||||||||||||||| ||||||||||||||||||| || ||||| | ||||||||||||||| ||||    
T  7460263 tgtgaacagatcctaagagtgagagtcgaagtgacgctatttacgttccaagagatgaatcatttgg 7460197  T

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Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 6371634 - 6371533
Alignment:
Q  9 atgatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggt 108  Q
    ||||||||||||| ||||||||||||||||||   |||||||||||| ||||||| |||||||| ||  |  || | ||||| |||||| ||||||||||    
T  6371634 atgatgttccaaatcatggaaccatcaactttaactgcaactcatggatttacaatgctaaaaactatcactctgagcgcatcttctttaccaacaaggt 6371535  T
Q  109 aa 110  Q
    ||    
T  6371534 aa 6371533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 353
Target Start/End: Complemental strand, 6452299 - 6452174
Alignment:
Q  228 cttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaa 327  Q
    ||||||||| ||||||||||||| |||    |||  ||| ||||||| ||| ||| | |||||||||||||||| ||||| || || |||||||| || |    
T  6452299 cttccaagtcaaacaccagctccattaaatcactttagagaagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaatgggatagga 6452200  T
Q  328 tatatgattatgatgtctacaatgat 353  Q
    |||| ||||||||||| || ||||||    
T  6452199 tatacgattatgatgtttataatgat 6452174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 675 - 742
Target Start/End: Complemental strand, 6425034 - 6424967
Alignment:
Q  675 acagatcctacgagtgagagtcgaagtgacactgtttacctcccaagagatgaatcacttggacacac 742  Q
    |||||||||| |||||||||||| || | |||||||||||| |||||||||||  || ||||||||||    
T  6425034 acagatcctaagagtgagagtcggagcggcactgtttaccttccaagagatgaggcatttggacacac 6424967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 6265562 - 6265475
Alignment:
Q  25 tggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggtaaga 112  Q
    |||||||||  ||||| |||||||||| ||||||||||| || ||||| |||  |||| | || |||||||| |||||||| ||||||    
T  6265562 tggaaccattcactttgtttgcaactcgtgggtttacaatgcgaaaaactacctaactgatcgtattttcttcgccaacaatgtaaga 6265475  T

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Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 220 - 362
Target Start/End: Original strand, 9603035 - 9603177
Alignment:
Q  220 agacataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatg 319  Q
    ||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||| | | | ||||||||||||| |||||| | || || |||||    
T  9603035 agacatatcttccaagtcaaacaccagctccattagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatg 9603134  T
Q  320 ggaaagaatatatgattatgatgtctacaatgatttgggtgat 362  Q
    ||||||| | |||||||||||||||||||||||| | ||||||    
T  9603135 ggaaagagtttatgattatgatgtctacaatgatcttggtgat 9603177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 223 - 355
Target Start/End: Complemental strand, 42694526 - 42694394
Alignment:
Q  223 cataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 322  Q
    |||| ||||| ||||||||||| ||||| |||||  | || ||| ||||||||||||| | |||||||||||||||||| ||||| || || ||||||||    
T  42694526 catatcttcctagtgaaacaccggctccattagtccattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 42694427  T
Q  323 aagaatatatgattatgatgtctacaatgattt 355  Q
    |||||| ||||||||||||||||||||||||||    
T  42694426 aagaatctatgattatgatgtctacaatgattt 42694394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42686807 - 42686905
Alignment:
Q  11 gatgttccaaaccatggaaccatcaactttctttgcaactcatgggtttacaacgctaaaaattacaaaactaaacgcattttctttgccaacaaggta 109  Q
    |||||||||||||||||||||||    ||| | |||||||| |||||||||||||| |||  |||||||| |  |||||||||||||||||||||||||    
T  42686807 gatgttccaaaccatggaaccattcgatttgtatgcaactcttgggtttacaacgcaaaactttacaaaagtccacgcattttctttgccaacaaggta 42686905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 42687136 - 42687263
Alignment:
Q  228 cttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaa 327  Q
    |||||||||||||||||| ||||  ||||  | || ||| ||||||||||| | | |||||| ||||||||||| |||||||| |||  |   ||||| |    
T  42687136 cttccaagtgaaacaccatctccactagtcaagtatagagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaagga 42687235  T
Q  328 tatatgattatgatgtctacaatgattt 355  Q
    | || ||||| |||||||||||||||||    
T  42687236 tctacgattacgatgtctacaatgattt 42687263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 223 - 358
Target Start/End: Original strand, 36743886 - 36744021
Alignment:
Q  223 cataccttccaagtgaaacaccagctcctttagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 322  Q
    |||||||||||  |||||  ||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| ||||||||||    
T  36743886 cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga 36743985  T
Q  323 aagaatatatgattatgatgtctacaatgatttggg 358  Q
     ||||| |||||||||||||| ||||||||||||||    
T  36743986 cagaatctatgattatgatgtttacaatgatttggg 36744021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 35722304 - 35722372
Alignment:
Q  285 ttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgat 353  Q
    ||||||||| |||||   |||||||||||| |||  || ||||| ||||||||||||||||||||||||    
T  35722304 ttaagaggaaatggagaaggagagcgtaagaaatcagacagaatctatgattatgatgtctacaatgat 35722372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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