View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445-Insertion-10 (Length: 80)

Name: NF0445-Insertion-10
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445-Insertion-10
NF0445-Insertion-10
[»] chr1 (6 HSPs)
chr1 (8-74)||(48585795-48585861)
chr1 (8-74)||(48640368-48640434)
chr1 (22-74)||(48662002-48662054)
chr1 (29-77)||(11547696-11547744)
chr1 (22-74)||(48617815-48617867)
chr1 (22-74)||(48629306-48629358)


Alignment Details
Target: chr1 (Bit Score: 63; Significance: 5e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48585861 - 48585795
Alignment:
8 aaaccatctagttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 74  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48585861 aaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 48585795  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48640434 - 48640368
Alignment:
8 aaaccatctagttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 74  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48640434 aaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 48640368  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 48662054 - 48662002
Alignment:
22 gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 74  Q
    |||||||||||| |||||||||||| |||||| |||| || ||||||||||||    
48662054 gactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaaca 48662002  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 11547744 - 11547696
Alignment:
29 aaagtatcttgctgcaaagggtgccactgttatcttcaccacaacaaag 77  Q
    ||||| ||||||||||||||||||  |||| ||||||| ||||||||||    
11547744 aaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaag 11547696  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 48617815 - 48617867
Alignment:
22 gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 74  Q
    |||||| ||||| ||||||||||||||||||  |||| ||||||| |||||||    
48617815 gactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaaca 48617867  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 48629358 - 48629306
Alignment:
22 gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca 74  Q
    |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||    
48629358 gactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaaca 48629306  T

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