View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445-Insertion-10 (Length: 80)
Name: NF0445-Insertion-10
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0445-Insertion-10 |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 5e-28; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48585861 - 48585795
Alignment:
Q |
8 |
aaaccatctagttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
74 |
Q |
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T |
48585861 |
aaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
48585795 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 48640434 - 48640368
Alignment:
Q |
8 |
aaaccatctagttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
74 |
Q |
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T |
48640434 |
aaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
48640368 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 48662054 - 48662002
Alignment:
Q |
22 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
74 |
Q |
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T |
48662054 |
gactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaaca |
48662002 |
T |
 |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 11547744 - 11547696
Alignment:
Q |
29 |
aaagtatcttgctgcaaagggtgccactgttatcttcaccacaacaaag |
77 |
Q |
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T |
11547744 |
aaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaag |
11547696 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 48617815 - 48617867
Alignment:
Q |
22 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
74 |
Q |
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T |
48617815 |
gactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaaca |
48617867 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 48629358 - 48629306
Alignment:
Q |
22 |
gactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaaca |
74 |
Q |
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|||||||||| | ||||||||||||||||||| |||| ||||| || |||||| |
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T |
48629358 |
gactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaaca |
48629306 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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