View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445-Insertion-2 (Length: 741)

Name: NF0445-Insertion-2
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445-Insertion-2
NF0445-Insertion-2
[»] chr2 (1 HSPs)
chr2 (8-741)||(14210700-14211440)


Alignment Details
Target: chr2 (Bit Score: 671; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Complemental strand, 14211440 - 14210700
Alignment:
Q  8 aaatgcacggcgctcgagttttttcaggaaatcctatgcataccaaggtatgtaactatgtaaccagttatttcatttgtattttctttcgaaatgtaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14211440 aaatgcacggcgctcgagttttttcaggaaatcctatgcataccaaggtatgtaactatgtaaccagttatttcatttgtattttctttcgaa-tgtaat 14211342  T
Q  108 tgagtagaatttgtagcatcgatgtcttcaaatagtagatagaatgatttgatttcatttttctattttgatttattcagatcatcagctattaatctgc 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211341 taagtagaatttgtagcatcgatgtcttcaaatagtagatagaatgatttgatttcatttttctattttgatttattcagatcatcagctattaatctgc 14211242  T
Q  208 tgcagaggataaaacaagaaagcagaatcaatattatgcagatactaatgcattgtgcccatcaattacaacctgatcaccagattttagctgctaacct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211241 tgcagaggataaaacaagaaagcagaatcaatattatgcagatactaatgcattgtgcccatcaattacaacctgatcaccagattttagctgctaacct 14211142  T
Q  308 attgattcagttagacacattggtaatgttttaaattcagaaaaatttaagtttataggttacaaattcttatcatgaagaaagtcctagggaacaaaga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14211141 attgattcagttagacacattggtaatgttttaaattcagaaaaatttaagtttataggttacaaattcttatcatgaagaaagtcctagggaacaaaga 14211042  T
Q  408 ttggatcattccatttgcattctgttaattctatttacatgtggttgataatttgctaagaggcaacaatgacattcaccaaaggagaatatcttatgga 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  14211041 ttggatcattccatttgcattctgttaattctatttacatgtggttgataatttgctaagaggcaacaatgacattcatcaaagaagaatatcttatgga 14210942  T
Q  508 tccaatatattaaaagtttgagtatcaagtcactaaatgatacatttggccagggtcttaaattgtgattgtttcatgatttttgatattgcagtataat 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14210941 tccaatatattaaaagtttgagtatcaagtcactaaatgatacatttggccagggtcttaaattgtgattgtttcatgatttttgatattgcagtataat 14210842  T
Q  608 atggatgatatagtcacaacaatgagatcg---------aaaaaaccttggtgtcatgccacaattgctgtcacagaccgcgtctaaaaacttctgtaac 698  Q
    ||||||||||||||||||||||||||||||         |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14210841 atggatgatatagtcacaacaatgagatcgcagagacataaaaaaactt-gtgtcatgccacaattgctgtcacagaccacgtctaaaaacttctgtaac 14210743  T
Q  699 gattttttgttttgcggtcaaatgagacttatattgtcacaat 741  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  14210742 gattttttgttttgcggtcaaacgagacttatattgtcacaat 14210700  T

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