View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445-Insertion-3 (Length: 740)
Name: NF0445-Insertion-3
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 708
Target Start/End: Complemental strand, 35696657 - 35695948
Alignment:
| Q |
8 |
caaggcaacgaaacgaatcttggattttctgttacgaggtaaaagattgttgagatgaacagcgacagttccaatgagaacatcacggagccaagcagag |
107 |
Q |
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| T |
35696657 |
caaggcaacgaaacgaatcttggattttctgttacgaggtaaaagattgttgagatgaacagcgacagttccaatgagaacatcacggagccaagcagag |
35696558 |
T |
|
| Q |
108 |
gcatagatttcaatcataatgacaggctcttctgataggaggaaatcatcgtcgacgcggaaaacaaatttttcattccaggcagggttgttatgaccat |
207 |
Q |
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| T |
35696557 |
gcatagatttcaatcataatgacagactcttctgataggaggaaatcatcgtcgacgcggaaaacaaatttttcattccaggtagggttgttatgaccat |
35696458 |
T |
|
| Q |
208 |
gagggtctgcttgggtggtaagtttacgttctggattgagccatgcaactgcataggctttgattgatttagaaacgggtgcgaggtcttgtgctgatat |
307 |
Q |
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| T |
35696457 |
gagggtctgcttgggtggtaagtttacgttctggattgagccatgcaactgcataggctttgattgatttagaaacgggtgcgaggtcttgtgctgatat |
35696358 |
T |
|
| Q |
308 |
gacgttgatttctaggagttggaagggaggtactagcatcgacattgttgtgatgaggttgattttgttgtgaaaattgaaatgataatgctatggggtg |
407 |
Q |
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| T |
35696357 |
gacgttgatttctaggagttggaagggaggtgctagcatcgacattgttgtgatgaggttgattttgttgtgaaaattgaaatgataatgctatggggtg |
35696258 |
T |
|
| Q |
408 |
attgatggagggggagcagccggtgttatggctgagactcacccaccaccttgtgaattggacaaatggaaatgattctttctttctctctaaggggata |
507 |
Q |
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| T |
35696257 |
attgatggagggggagcagccggtgttatggctgagactcacccaccaccttgtgaattggacaaatggaaatgattctttctttctctctaaggggata |
35696158 |
T |
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| Q |
508 |
aacaacatgatttggttatgatggaaagctaaaaatggcatgnnnnnnnnnnnnnnnngggtttgattcatgcatggaaagattggatgaaggagagaat |
607 |
Q |
| |
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| T |
35696157 |
aacaacatgatttggttatgatggaaagctaaaaatggcat--ttttattttatttttgggtttgattcatgcatgaaaagattggatgaaggagagaat |
35696060 |
T |
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| Q |
608 |
agtggttgttgagataaattggttttggtatctgtcatggacaatttcttatga-----------ttttactcaactagttaagaaccttctacccaaaa |
696 |
Q |
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| T |
35696059 |
agtggttgttgagataaattggttttggtatctgtcatggacaatttcttatgatttcattgattttttactcaactagttaagaaccttctaccaaaaa |
35695960 |
T |
|
| Q |
697 |
taggatagaaaa |
708 |
Q |
| |
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| T |
35695959 |
taggatagaaaa |
35695948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 47725460 - 47725572
Alignment:
| Q |
75 |
gttccaatgagaacatcacggagccaagcagaggcatagatttcaatcataatgacaggctcttctgataggaggaaatcatcgtcgacgcggaaaacaa |
174 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||||| || |||| |||||| ||| || |||| |||||||||||||||| |
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| T |
47725460 |
gttccaatgagaatatcacggagccaagcagaattgtagatttcaatcatgataacagaactttctgaattgagaaattcattatcgacgcggaaaacaa |
47725559 |
T |
|
| Q |
175 |
atttttcattcca |
187 |
Q |
| |
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|||| |||||||| |
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| T |
47725560 |
atttctcattcca |
47725572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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