View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445-Insertion-4 (Length: 583)
Name: NF0445-Insertion-4
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 21557756 - 21557381
Alignment:
| Q |
8 |
aggtattggaatcttaacacaattatttccttttaagaaatatagtctattcaattaactaatgataatatgggtaacaatatcaaaattcctggctcat |
107 |
Q |
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| T |
21557756 |
aggtattggaatcttaacacaattatttccttttaagaaatatagtgtattcaattaactaatgataatatgggtaacaatatcaaaattcctggctcat |
21557657 |
T |
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| Q |
108 |
gtgtatatgattgaaaaacaaggaacgtgaggaatcactgctttgaatctcaatcagttctcnnnnnnncttatttattcatgaaagctttaaagctcat |
207 |
Q |
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| T |
21557656 |
gtgtatatgattgaaaaacaaggaacgtgaggaatcactgctttgaatctcaatcagttctctttttttcttatttattcatgaaagctttaaagctcat |
21557557 |
T |
|
| Q |
208 |
gcactctatagtatacataataatttatttatattcttctgacttaatttcttgaaatacaaaagtcatctagtatttttattaattcagaccaagtcat |
307 |
Q |
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| T |
21557556 |
gcactctatagtatacataataatttatttatattcttctgacttaatttcttgaaatgcaaaagtcatctagtattttcattaattcagaccaagtcat |
21557457 |
T |
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| Q |
308 |
gtcaatacacttgatgtatgtttgatttcacttttgaaagtgttaaaattgattctagaaggatagaattaattttaaatta |
389 |
Q |
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| T |
21557456 |
gtca------gtgatgtatgtttgatttcacttttgaaagtgttaaaattgattctagatggatagaattaattttgaatta |
21557381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 425 - 583
Target Start/End: Complemental strand, 21557378 - 21557220
Alignment:
| Q |
425 |
aagaatacatttggatgttaagttacaatttatagtttttgatttcaaatgttatttttatcctcaaatttatggttcaacacaagacatgcagcaagaa |
524 |
Q |
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| T |
21557378 |
aagaatacattttgacgttaagttacaatttatagtttttgatttcaaatgttatttttatcctcaaatttattgttcaacacaagacatgcagggagaa |
21557279 |
T |
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| Q |
525 |
aagtagtaaagatcacaaaaatgtcgctctatctatgccacccataaaagcataaacaa |
583 |
Q |
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| T |
21557278 |
aagtagtaaagatcataaaaatgtcactctatctataccacccataaaagcataaacaa |
21557220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 43717235 - 43717296
Alignment:
| Q |
322 |
tgtatgtttgatttcacttttgaaagtgttaaaattgattctagaaggatagaattaatttt |
383 |
Q |
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| T |
43717235 |
tgtacgtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgatttt |
43717296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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