View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445-Insertion-5 (Length: 448)
Name: NF0445-Insertion-5
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445-Insertion-5 |
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| [»] scaffold0386 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 427
Target Start/End: Original strand, 6075844 - 6076265
Alignment:
| Q |
8 |
cataaagcattggtttgttacccgaattaataggggaccatttttgtgccaattacttgttagccaaataaagcaaattctcgattctacgaccatgtct |
107 |
Q |
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|||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6075844 |
cataaagcattggtttgttaccagaattaacagaggaccatttttgtgccaattacttgttagccaaataaagcaaattctcgattctacgaccatgtct |
6075943 |
T |
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| Q |
108 |
tgactggatttggatcacagttaagctatcgtgaggaatgcaaattctattgcatggggggcaatgaaagagactttctccaatgttgtaagctatgttg |
207 |
Q |
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| T |
6075944 |
tgactggatttggatcacagttaggctatcgtgaggaatgcaaattctattgcatggggggcaatgaaagggactttctccaatgttgtaagctatgttg |
6076043 |
T |
|
| Q |
208 |
aagaaattctgaaatattatctttttcaattttatggagggcgaattactttcttaattaaaacgtattttttaattagagttttgttactaaagctaat |
307 |
Q |
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| T |
6076044 |
aagaaattctgaaatattatctttttcaattttatggagggtgaattactttcttaattaaaacgta-tttttaattagagttttgttactaaagctaat |
6076142 |
T |
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| Q |
308 |
gtactaccttttgt---nnnnnnnnnnnnnnnnnnccttacgacaagcgatgcaggtttcgacggctttttaaaaaaccattacgatggtttggatttaa |
404 |
Q |
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| T |
6076143 |
gtactaccttttgtaaaaaaaaaaaaaaaaaaaaatcttacggcaagcgatgcaggtttcggcggctttttaaaaaatcattacgatggtttggatttaa |
6076242 |
T |
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| Q |
405 |
gatttttctaattcatttggtag |
427 |
Q |
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| T |
6076243 |
gatttttctgattcatttggtag |
6076265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 5688980 - 5688889
Alignment:
| Q |
8 |
cataaagcattggtttgttacccgaa---ttaataggggaccatttttgtgccaattacttgttagccaaataaagcaaattctcgattcta |
96 |
Q |
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| T |
5688980 |
cataaagcattggtttgttaccagaagaattaatagaggaccatttttgtgccaattactacttagcaaaataaagcaaattcccgaatcta |
5688889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 319
Target Start/End: Original strand, 2320 - 2616
Alignment:
| Q |
8 |
cataaagcattggtttgttacccgaattaataggggaccatttttgtgccaattacttgttagccaaataaagcaaattctcgattctacgaccatgtct |
107 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||||||||||| | | |||||||| | |
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| T |
2320 |
cataaagcattggtttgttaccaaaattaatacaggaccatttttgtgc-aattactggttagccaaataaagcaaattcccaaatctacgacta----- |
2413 |
T |
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| Q |
108 |
tgactggatttggatcacagttaagctatcgtgaggaatgcaaattctattgcatggggggcaatgaaagagactttctccaatgttgtaagctatgttg |
207 |
Q |
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|||| |||||||| |||||| ||||||| |||||||||| ||||||||||||| | ||| |||||||||| |||||||||||||||||||| |
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| T |
2414 |
------gattacgatcacagataagctgtcgtgag-aatgcaaattttattgcatgggggt-attgagagagactttcctcaatgttgtaagctatgttg |
2505 |
T |
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| Q |
208 |
aagaaattctgaaatattatcttttt-caattttatggagggcgaattactttcttaattaaaacgtattttttaattagagttttgttactaaagctaa |
306 |
Q |
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|||||| |||||||||| |||||||| ||||||||||| ||| ||||||||| | ||||||||| ||| || ||||||||||||||||||||||||||| |
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| T |
2506 |
aagaaaatctgaaatatcatctttttccaattttatggggggtgaattacttgc-taattaaaatgta-gttgtaattagagttttgttactaaagctaa |
2603 |
T |
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