View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0445-Insertion-8 (Length: 171)
Name: NF0445-Insertion-8
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445-Insertion-8 |
 | |
|
| [»] chr5 (11 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 6e-88; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 6e-88
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 39486744 - 39486581
Alignment:
| Q |
8 |
tccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39486744 |
tccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcg |
39486645 |
T |
|
| Q |
108 |
gtgtttgggggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaaggg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39486644 |
gtgtttgggggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaaggg |
39486581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 39475780 - 39475649
Alignment:
| Q |
16 |
gttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgaca---aaacgtggttcggtgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| | |||| ||| |||||||| |
|
|
| T |
39475780 |
gttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaaacctggatcggtgtt |
39475681 |
T |
|
| Q |
113 |
tgggggaagagaacattctggaaggttgatga |
144 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |
|
|
| T |
39475680 |
tgggggaagagaaacttctggaaggttgatga |
39475649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 39483531 - 39483405
Alignment:
| Q |
16 |
gttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||||||| ||| || || | | ||| |||||| |
|
|
| T |
39483531 |
gttgtccttctctagtagtgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaactagatcgaagtttgg |
39483432 |
T |
|
| Q |
116 |
gggaagagaacattctggaaggttgat |
142 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
39483431 |
gggaagataacattctggaaggttgat |
39483405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 39470662 - 39470807
Alignment:
| Q |
23 |
ttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaaga |
122 |
Q |
| |
|
||||| ||||||||||||||| | ||||||||||||||||| ||| |||||||| |||||||||||||| | ||| ||| || | | ||||| ||| | |
|
|
| T |
39470662 |
ttctccagtagtgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctggatcagaggttgggagaaca |
39470761 |
T |
|
| Q |
123 |
gaacattctggaaggttgatgacctggagagaatcggaaatgggaa |
168 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
39470762 |
gaaacttctggaaggttgatgacatggagagaatcagagatgggaa |
39470807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 39454897 - 39454782
Alignment:
| Q |
29 |
agtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcat-gacaaaacgtggttcggtgtttgggggaagagaaca |
127 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||| || |||| ||| | ||||||||||||||||| || |
|
|
| T |
39454897 |
agtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaac-tggattagtgtttgggggaagagagca |
39454799 |
T |
|
| Q |
128 |
ttctggaaggttgatga |
144 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39454798 |
ttctggaaggttgatga |
39454782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 39460509 - 39460368
Alignment:
| Q |
28 |
tagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaaca |
127 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||| |||||||||||| |||| ||| |||| || ||||||| ||||||||||||||||| |
|
|
| T |
39460509 |
tagtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagttggttcgatgtttgggggaagagaaac |
39460410 |
T |
|
| Q |
128 |
ttctggaaggttgatgacctggagagaatcggaaatgggaag |
169 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||| ||||||| |
|
|
| T |
39460409 |
ttctggaaggttgatgatgtcgagagaatcagaagtgggaag |
39460368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 39464451 - 39464584
Alignment:
| Q |
35 |
gaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgga |
134 |
Q |
| |
|
|||||| || || |||||||||||||||||||| ||||| ||||||||||||||||| | ||| ||| || | | || ||||||||||| ||||||| |
|
|
| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctgga |
39464550 |
T |
|
| Q |
135 |
aggttgatgacctggagagaatcggaaatgggaa |
168 |
Q |
| |
|
||||||||||| | |||||||| || ||||||| |
|
|
| T |
39464551 |
aggttgatgacattaagagaatcagatatgggaa |
39464584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 39472289 - 39472152
Alignment:
| Q |
34 |
tgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaaacgtggttcggtgtttgggggaagagaacattctgg |
133 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| || | | || |||||||||| ||||||||||||||| |
|
|
| T |
39472289 |
tgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagggaccttgatctgtgtttggggcaagagaacattctgg |
39472190 |
T |
|
| Q |
134 |
aaggttgatgacctggagagaatcggaaatgggaaggg |
171 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||| |
|
|
| T |
39472189 |
aaggttgatgatgtggagtgaatcggagataggaaggg |
39472152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 39451270 - 39451116
Alignment:
| Q |
20 |
tccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatg---acaaaacgtggttcggtgtttggg |
116 |
Q |
| |
|
|||| ||| |||||||||||| || || ||||||||||| ||||||||||||||||| |||||||| |||| | |||| ||| | ||||||||| |
|
|
| T |
39451270 |
tcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaaacctggattggtgtttgga |
39451171 |
T |
|
| Q |
117 |
ggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaaggg |
171 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| || || ||||||| |
|
|
| T |
39451170 |
ggaagagaaacttctggaaggttgatgatgttgagagaatctgagataggaaggg |
39451116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 39458207 - 39458251
Alignment:
| Q |
31 |
tagtgaggttggatacagcttgtttgacgtttggtttctgagctt |
75 |
Q |
| |
|
||||||||||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
39458207 |
tagtgaggttggagacggcttttttgacgtttggtttctgagctt |
39458251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 39458286 - 39458314
Alignment:
| Q |
110 |
gtttgggggaagagaacattctggaaggt |
138 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39458286 |
gtttgggggaagagaacattctggaaggt |
39458314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1447 times since January 2019
Visitors: 3230