View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_1D_high_2 (Length: 501)

Name: NF0445_1D_high_2
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_1D_high_2
NF0445_1D_high_2
[»] chr5 (3 HSPs)
chr5 (75-478)||(6963109-6963526)
chr5 (1-74)||(6963574-6963647)
chr5 (6-61)||(38307967-38308022)
[»] chr8 (6 HSPs)
chr8 (191-473)||(33605914-33606196)
chr8 (7-58)||(15546657-15546708)
chr8 (9-45)||(44912249-44912285)
chr8 (7-62)||(12929071-12929126)
chr8 (7-42)||(45183575-45183610)
chr8 (9-61)||(15849205-15849257)
[»] chr4 (2 HSPs)
chr4 (1-62)||(35884248-35884309)
chr4 (7-43)||(36832827-36832863)
[»] chr1 (1 HSPs)
chr1 (1-68)||(41048031-41048098)
[»] chr2 (2 HSPs)
chr2 (7-60)||(4634200-4634253)
chr2 (22-58)||(3394602-3394638)
[»] chr7 (1 HSPs)
chr7 (7-61)||(28102964-28103018)
[»] chr3 (2 HSPs)
chr3 (7-61)||(9596369-9596423)
chr3 (22-68)||(39286770-39286816)
[»] chr6 (1 HSPs)
chr6 (7-60)||(24093857-24093910)


Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 75 - 478
Target Start/End: Complemental strand, 6963526 - 6963109
Alignment:
Q  75 gaccacgtgacattttaagcattatgatcaagtcattataatatacaaacatgatg--------------tgctcttaaccaattggtgtcaaaagattt 160  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||    
T  6963526 gaccatgtgacattttaagcattatgatcaagtcattataatatacaaacatgatactaattgctctcaatgctcttaaccaattggtgtcaaaagattt 6963427  T
Q  161 tgctaacaaaatcgaaaccaacagaaatgttctatgactcaagttgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatc 260  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6963426 tgctaacaaaatctaaaccatcagaaatgttctatgactcaagctgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatc 6963327  T
Q  261 agtatcagaaggctgaatactttcaaacacaccaataacctcaccagtttcaggcttactctgagttacactcaatgtaattttccctttagatgatgca 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6963326 agtatcagaaggctgaatactttcaaacacaccaataacctcaccagtttcaggcttactctgagttacactcaatgtaattttccctttagatgatgca 6963227  T
Q  361 gcactcttgttattttccttaccaagttcttcctcatcgcctcttccaccagcaggcaatgcaactgcattgtcataaccagttgaagcacctcttccct 460  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6963226 gcactcttgttattttccttaccaagttcttcctcatcgcctcttccaccagcaggcaatgcaactgcattgtcataaccagttgaggcacctcttccct 6963127  T
Q  461 ttgggtccaagaacgacg 478  Q
    ||||||||||||||||||    
T  6963126 ttgggtccaagaacgacg 6963109  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6963647 - 6963574
Alignment:
Q  1 aaatagactttttctacgtcaaatttataatttatttctattttttacttctgaactagtgccttaagagcatt 74  Q
    |||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6963647 aaatcgactttttctacattaaatttataatttatttctattttttacttctcaactagtgccttaagagcatt 6963574  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 38307967 - 38308022
Alignment:
Q  6 gactttttctacgtcaaatttataatttatttctattttttacttctgaactagtg 61  Q
    |||||||||||| ||||||| ||||||||||||||||||| | |||| ||||||||    
T  38307967 gactttttctacatcaaattcataatttatttctatttttgatttcttaactagtg 38308022  T

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Target: chr8 (Bit Score: 183; Significance: 9e-99; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 191 - 473
Target Start/End: Original strand, 33605914 - 33606196
Alignment:
Q  191 tctatgactcaagttgagcataccaaacaccttgaatcttaacatccttaggagctttagcacctaaatcagtatcagaaggctgaatactttcaaacac 290  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  33605914 tctatgactcaagctgagcataccaaacaccttggattttaacatcctttggtgctttagcacccaaatcagtgtcagacggctgaatactctcaaacac 33606013  T
Q  291 accaataacctcaccagtttcaggcttactctgagttacactcaatgtaattttccctttagatgatgcagcactcttgttattttccttaccaagttct 390  Q
    ||||||||| |||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||    
T  33606014 accaataacttcaccagtctcaggcttagtttgagtaacactcaatgtgattttccccttagatgatgcagcactcttgttgttttcctttccaagttct 33606113  T
Q  391 tcctcatcgcctcttccaccagcaggcaatgcaactgcattgtcataaccagttgaagcacctcttccctttgggtccaagaa 473  Q
    || ||||| |||||||| ||||| |||||||||||||||||||||||||| || || ||||||||||||||||||||||||||    
T  33606114 tcttcatctcctcttcctccagctggcaatgcaactgcattgtcataaccggtagatgcacctcttccctttgggtccaagaa 33606196  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 15546708 - 15546657
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattttttacttctgaacta 58  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||| |||||    
T  15546708 actttttctgcatcaaatttataatttatttctattttttagttcttaacta 15546657  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 44912249 - 44912285
Alignment:
Q  9 tttttctacgtcaaatttataatttatttctattttt 45  Q
    ||||||||| |||||||||||||||||||||||||||    
T  44912249 tttttctacatcaaatttataatttatttctattttt 44912285  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 12929071 - 12929126
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattttttacttctgaactagtgc 62  Q
    ||||||||| | ||||||||||||||||||| ||||||| | |||| |||||||||    
T  12929071 actttttctgcatcaaatttataatttatttttatttttgatttcttaactagtgc 12929126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 45183610 - 45183575
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctatt 42  Q
    ||||||||||| ||||||||||||||||||||||||    
T  45183610 actttttctacatcaaatttataatttatttctatt 45183575  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 15849205 - 15849257
Alignment:
Q  9 tttttctacgtcaaatttataatttatttctattttttacttctgaactagtg 61  Q
    ||||| ||| ||||||||||||| ||||| |||||||||||||| || |||||    
T  15849205 tttttatacatcaaatttataatctatttatattttttacttcttaattagtg 15849257  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35884309 - 35884248
Alignment:
Q  1 aaatagactttttctacgtcaaatttataatttatttctattttttacttctgaactagtgc 62  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| || ||| |||||||||    
T  35884309 aaatagactttttctacatcaaatttataatttatttctatttttgacctcttaactagtgc 35884248  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 36832863 - 36832827
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattt 43  Q
    ||||||||||| | |||||||||||||||||||||||    
T  36832863 actttttctacataaaatttataatttatttctattt 36832827  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 41048098 - 41048031
Alignment:
Q  1 aaatagactttttctacgtcaaatttataatttatttctattttttacttctgaactagtgccttaag 68  Q
    ||||| ||||||||||  ||||||||||||||||||| ||||||| | |||| |||||||||||||||    
T  41048098 aaataaactttttctatttcaaatttataatttatttttatttttgagttcttaactagtgccttaag 41048031  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 4634200 - 4634253
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattttttacttctgaactagt 60  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||| |||||||    
T  4634200 actttttctacatcaaattcataatttatttctcttttttacttcttaactagt 4634253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 3394602 - 3394638
Alignment:
Q  22 aatttataatttatttctattttttacttctgaacta 58  Q
    |||||||||||||||||||||||| |||||| |||||    
T  3394602 aatttataatttatttctatttttgacttcttaacta 3394638  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 28102964 - 28103018
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattttttacttctgaactagtg 61  Q
    ||||||||||||||||||||||| |||| |||||||||| |||| | ||||||||    
T  28102964 actttttctacgtcaaatttatattttaattctatttttgactttttaactagtg 28103018  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9596369 - 9596423
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattttttacttctgaactagtg 61  Q
    |||||||| || ||||||||||||||||||||||||||| | |||| ||||||||    
T  9596369 actttttccacatcaaatttataatttatttctatttttgagttcttaactagtg 9596423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 39286816 - 39286770
Alignment:
Q  22 aatttataatttatttctattttttacttctgaactagtgccttaag 68  Q
    |||||||||||||||||||||||| |||||| ||||| |||| ||||    
T  39286816 aatttataatttatttctatttttgacttcttaactaatgccataag 39286770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 24093857 - 24093910
Alignment:
Q  7 actttttctacgtcaaatttataatttatttctattttttacttctgaactagt 60  Q
    ||||||||||| |||||||||||||| |||||||||||| | |||| |||||||    
T  24093857 actttttctacatcaaatttataattcatttctatttttgagttcttaactagt 24093910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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