View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_high_3 (Length: 454)
Name: NF0445_1D_high_3
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 322
Target Start/End: Original strand, 6963972 - 6964286
Alignment:
| Q |
4 |
agatgacttttactcggtaagtattgaaaa-aagactcatcttgatctcaaatcaacaccaatagccttctagtgcatgatatatgatgtgattggagag |
102 |
Q |
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| T |
6963972 |
agatgactttgactcggtaagtattgaaaaaaagactcatcttgatctcaaatcaacaccaatatccttctagtgcatgatatatgatgtgattggagag |
6964071 |
T |
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| Q |
103 |
aagaatgggttgaatgattaaaggcccttcaacccgaatagtgtagccatcgcaccgacggaacagattctttgcacaataacaatatctacaggatttc |
202 |
Q |
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| T |
6964072 |
aagaatgggttgaatgattaaaggcccttcaacccgaatagtgtagccatcgcaccgacggaacagattccttgcacaataacaatatctacaggatttc |
6964171 |
T |
|
| Q |
203 |
atcccccacttaaagcaagaataaaattaaaacaaattcattgtcctactattttagtatttgtttctctcattatagtatagtatagtaccttcctatt |
302 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
6964172 |
atctcccacttaaagcaagaataaaattaaaacaaattcattgtcctactattttagtatttgtctctctcat-----tatagtatagtaccttcctatt |
6964266 |
T |
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| Q |
303 |
taaagtttcctattcccacc |
322 |
Q |
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| T |
6964267 |
taaagtttcctattcccacc |
6964286 |
T |
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