View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_high_5 (Length: 417)
Name: NF0445_1D_high_5
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 24875462 - 24875052
Alignment:
| Q |
7 |
ttggtgttttttgagaataaataagatagggaaaggagaacaattgaaaaatgcaactgtaacaacaatgacatctaccaaccaagttataaacaaggaa |
106 |
Q |
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| T |
24875462 |
ttggtgttttttgagaataaataagatagggaaaggagaacaattgaaaaatgcaactgtaacaacaatgacatctaccaaccaagctataaacaaggaa |
24875363 |
T |
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| Q |
107 |
taaatttcataattttgtgagaattacatattcttgcatattcaatgaattcaggtactttggatttctgtccctatcaatgataacagtaacaatcaca |
206 |
Q |
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| T |
24875362 |
taaatttcataattttgtgagaattacatattcttgcatattcaatgaattcaggtactttggatttctgtccctatcaatgataacagtaacaatcaca |
24875263 |
T |
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| Q |
207 |
tttcatgcataatttaccaaatcaaaagtaacnnnnnnncaacaaaatatctgtgttaaaatgaactgaacataaattagaagacccttttcatcaagaa |
306 |
Q |
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| T |
24875262 |
tttcatgcataatttaccaaatcaaaagtaactttttttcaacaaaatatctgtgttaaaatgaactgaacataaattagaagacccttttcatcaagaa |
24875163 |
T |
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| Q |
307 |
aatcaaaattgaagaaaagagagaaattctcacaggtgtgaaaacagggtaatcatgagcagagaactgagaaacagagcgtgaaacaggggaaggagat |
406 |
Q |
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| T |
24875162 |
aatcaaaattgaagaaaagaaagaaattctcacaggtgtgaaaacagggtaatcatgagcagagaactgagaaacagagcgtgaaacaggggaaggagat |
24875063 |
T |
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| Q |
407 |
agaaactttgc |
417 |
Q |
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| T |
24875062 |
agaaactttgc |
24875052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 341 - 383
Target Start/End: Complemental strand, 42072622 - 42072580
Alignment:
| Q |
341 |
ggtgtgaaaacagggtaatcatgagcagagaactgagaaacag |
383 |
Q |
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| T |
42072622 |
ggtgtgaaaacagggtaatcttgagcagagaactgagaaacag |
42072580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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