View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_11 (Length: 352)
Name: NF0445_1D_low_11
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 23 - 336
Target Start/End: Original strand, 34892938 - 34893252
Alignment:
| Q |
23 |
actgtccataagcaaaagtatcccattcgaaaccaagggaaaggctgaaggagcaaaaggaagaagagtatgatttccatataagcacaaacaatggaag |
122 |
Q |
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| T |
34892938 |
actgtccataagcaaaagtatcccattcgaaaccaagggaaaggctgaaggagcaaaacgaagaagagtatgatttccatataagcacaaacaatggaag |
34893037 |
T |
|
| Q |
123 |
tttagaattaaatggaattcaatgcaagaactcaccaggcaatttaaagctgtatcacctatgaggaaaatagcattgattgagtgcataatgattacca |
222 |
Q |
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| T |
34893038 |
tttagaattaaatggaattcaatgcaagaactcaccaggcaatttaaagctgtatcacctatgaggaaaatagcattgattgagtgcataatgattacca |
34893137 |
T |
|
| Q |
223 |
actgccacaaaagaatactataatcaatataagtggtttaatttccaagttttgaagtctctta-ttttttcctaggagaaaccccctgaatgaatgagt |
321 |
Q |
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| T |
34893138 |
actgccacaaaagaatactataatcaatataagtggtttaatttccaagttttgaagtctcttatttttttcctaggagaaaccccctgaatgaatgagt |
34893237 |
T |
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| Q |
322 |
tcatagaagatactt |
336 |
Q |
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| T |
34893238 |
tcatagaagatactt |
34893252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 43843074 - 43843127
Alignment:
| Q |
151 |
aactcaccaggcaatttaaagctgtatcacctatgaggaaaatagcattgattg |
204 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||| ||||||||||| |
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| T |
43843074 |
aactcaccaggcaatttaaagctgtatctcctagcaggaaaacagcattgattg |
43843127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 43842944 - 43842985
Alignment:
| Q |
22 |
aactgtccataagcaaaagtatcccattcgaaaccaagggaa |
63 |
Q |
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||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
43842944 |
aactgtccacaggcaaaagtatcctattcgaaaccaagggaa |
43842985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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