View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_12 (Length: 331)
Name: NF0445_1D_low_12
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 310
Target Start/End: Original strand, 46813133 - 46813432
Alignment:
| Q |
11 |
aaccaagtaagtatccgtggttcccacaatccactttccatcaaaagttacatccacattagtaacaggtgaaccaagtccaggaaaagcggttttcgcc |
110 |
Q |
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| T |
46813133 |
aaccaagtaagtatccgtggttcccacaatccactttccatcaaaagttacatccacattagtaacaggtgaaccaagtccaggaaaagcggttttcgcc |
46813232 |
T |
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| Q |
111 |
tgcctcatagagttgatagaatacagccgaatctttccatccaaagaaccaacaacaacagaaccatcaccagttgtagcaaagcactgaaagtttgtcc |
210 |
Q |
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| T |
46813233 |
tgcctcatagagttgatagaatacagccgaatctttccatccaaagaaccaacaacaacagaaccatcaccagttgtagcaaagcactgaaagtttgtcc |
46813332 |
T |
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| Q |
211 |
ccctggagaactgatgaccctgtgcccaattcaacacaggtgtactcatgttggagttagagtcagcaagatcctgaactattccatgacggtcgcgcat |
310 |
Q |
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| T |
46813333 |
ctctggagaactgatgaccctgtgcccaattcaacacaggtgtactcatgttggagttagagtcagcaagatcctgaactattccatgacggtcgcgcat |
46813432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 33762408 - 33762628
Alignment:
| Q |
12 |
accaagtaagtatccgtggttcccacaatccactttccatcaaaagttacatccacattagtaacaggtgaaccaagtccaggaaaagcggttttcgcct |
111 |
Q |
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| T |
33762408 |
accaaataagtatcagttgtacccaacacccactttccatcaaaagtaacatcaacgcttgtaataggtgaaccaagccctggaaaagccgtcttcgcca |
33762507 |
T |
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| Q |
112 |
gcctcatagagttgatagaatacagccgaatctttccatccaaagaaccaacaacaacagaaccatcaccagttgtagcaaagcactgaaagtttgtccc |
211 |
Q |
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| T |
33762508 |
tcctcatcgatttattcgaatacaaccttatcttcccatcaagagaccccaccacaattgaaccatctcctgtagttgcaaagcattgaaaatttgtccc |
33762607 |
T |
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| Q |
212 |
cctggagaactgatgaccctg |
232 |
Q |
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|| || || ||||| ||||| |
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| T |
33762608 |
tcttgaaaattgatgcccctg |
33762628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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