View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_1D_low_14 (Length: 310)

Name: NF0445_1D_low_14
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_1D_low_14
NF0445_1D_low_14
[»] chr6 (3 HSPs)
chr6 (1-257)||(23332595-23332851)
chr6 (252-294)||(23322331-23322373)
chr6 (252-294)||(23332498-23332540)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 23332851 - 23332595
Alignment:
Q  1 ggtcaaggtccacgtgaaaaatggcaaggtctatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23332851 ggtcaaggtccacgtgaaaaatggcaaggtttatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctg 23332752  T
Q  101 acttatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatga 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23332751 acgtatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatga 23332652  T
Q  201 ttgtccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccacatat 257  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23332651 ttgtcccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccatatat 23332595  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
Q  252 acatatgcgtttggattttacaacgattgtgtttggtgatgtc 294  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  23322373 acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc 23322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
Q  252 acatatgcgtttggattttacaacgattgtgtttggtgatgtc 294  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  23332540 acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc 23332498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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