View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_15 (Length: 300)
Name: NF0445_1D_low_15
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 33089060 - 33088770
Alignment:
| Q |
5 |
agtttggagttggaggaaccacatcaaccaagcaaagccattgatgaagagtaactatcagtaccaccgaatgagtcacccaaatgattaggcaaataag |
104 |
Q |
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| T |
33089060 |
agtttggagttggaggaaccacatcaatcaagcaa-gccattgatgaagagtaactatcagtaccaccgaatgagtcacccaaatgattaggcaaataag |
33088962 |
T |
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| Q |
105 |
ggagtcaaagaaagtgttgaaacacatgtgaagctataaagaaaagggctaaatgacttcaaatatatggtccttttacccttctaggttcaagtggttc |
204 |
Q |
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| T |
33088961 |
ggagtcaaagaaagtgttgaaacacatgtgaaggtataaagaaaagggctaaatggcttcaaatatatggtccttttacccttctaggttcaagtggttc |
33088862 |
T |
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| Q |
205 |
aaagttgcactccttttttgaactaagcaagttctgcatagtaatcaagttggagctgtgcacaacccaaaatgagagcttgtggccctagg |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33088861 |
aaagttgcactccttttttgaactaagcaagttctgcatagtaatcaagttggagctgtgcacaacccaaaatgagagcttgtggccctagg |
33088770 |
T |
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