View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_1D_low_17 (Length: 276)

Name: NF0445_1D_low_17
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_1D_low_17
NF0445_1D_low_17
[»] chr8 (3 HSPs)
chr8 (36-255)||(17881565-17881783)
chr8 (122-179)||(22928110-22928167)
chr8 (122-170)||(29642445-29642493)
[»] chr6 (4 HSPs)
chr6 (125-176)||(19703202-19703253)
chr6 (122-170)||(14600278-14600326)
chr6 (122-179)||(2661681-2661738)
chr6 (118-170)||(31872984-31873036)
[»] chr3 (1 HSPs)
chr3 (115-178)||(54079262-54079325)
[»] chr2 (2 HSPs)
chr2 (122-170)||(2704386-2704434)
chr2 (122-170)||(23463744-23463792)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 17881565 - 17881783
Alignment:
Q  36 aaggatatattttcttgaagcaaacatatgaaggatttatatcatgccattgtcaactctaaattgtttatacagtgcattcattttctataactattaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  17881565 aaggatatattttcttgaagcaaacatatgaaggatttatatcatgccattgtcaactctaagttgtttatacagtgcattcatcttctataactattaa 17881664  T
Q  136 ttaagacaaaacattgttttggtgtagccttttttactttccaagaatacctttcattttcttcttcaactttaattttcatctagacattttgatgata 235  Q
    |||||  |||||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||| || || ||| ||||||||||    
T  17881665 ttaaggaaaaacattgttttgctgtagcgttttttactttccaagaataccttt-attttattcttcaattttaattttaatttacacaatttgatgata 17881763  T
Q  236 aggactggtagtaaccgctt 255  Q
     |||| |||| |||| ||||    
T  17881764 tggaccggtaataacagctt 17881783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 22928110 - 22928167
Alignment:
Q  122 tctataactattaattaagacaaaacattgttttggtgtagccttttttactttccaa 179  Q
    |||||| |||||||| ||||||||||||   |||||||||||||||||| | ||||||    
T  22928110 tctatacctattaataaagacaaaacatgtgtttggtgtagccttttttccattccaa 22928167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 29642493 - 29642445
Alignment:
Q  122 tctataactattaattaagacaaaacattgttttggtgtagcctttttt 170  Q
    |||||| |||||||| ||||||| ||||  |||||||||||||||||||    
T  29642493 tctatacctattaataaagacaatacatgtttttggtgtagcctttttt 29642445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 19703202 - 19703253
Alignment:
Q  125 ataactattaattaagacaaaacattgttttggtgtagccttttttactttc 176  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||||||    
T  19703202 ataactatttataaagacaaaacattgttttggtgtggccttttttactttc 19703253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 14600278 - 14600326
Alignment:
Q  122 tctataactattaattaagacaaaacattgttttggtgtagcctttttt 170  Q
    ||||||||||||||| |||  ||||||||||||||||||||||||||||    
T  14600278 tctataactattaataaagggaaaacattgttttggtgtagcctttttt 14600326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 2661681 - 2661738
Alignment:
Q  122 tctataactattaattaagacaaaacattgttttggtgtagccttttttactttccaa 179  Q
    ||||||||||||||| |||  ||||| ||||| |||||||||||||||| | ||||||    
T  2661681 tctataactattaataaagggaaaactttgttgtggtgtagcctttttttcattccaa 2661738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 31872984 - 31873036
Alignment:
Q  118 attttctataactattaattaagacaaaacattgttttggtgtagcctttttt 170  Q
    ||||||||||||||||||| |||  ||||||| | ||||||||||||| ||||    
T  31872984 attttctataactattaataaaggaaaaacatggatttggtgtagcctatttt 31873036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 54079325 - 54079262
Alignment:
Q  115 ttcattttctataactattaattaagacaaaacattgttttggtgtagccttttttactttcca 178  Q
    |||||| |||||| |||||||| ||||||| |||||  ||||||||||||| ||||||||||||    
T  54079325 ttcattatctatatctattaataaagacaatacatttatttggtgtagcctattttactttcca 54079262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 2704386 - 2704434
Alignment:
Q  122 tctataactattaattaagacaaaacattgttttggtgtagcctttttt 170  Q
    ||||||||||||||| ||| |||||||||  ||||||||||||||||||    
T  2704386 tctataactattaataaaggcaaaacattagtttggtgtagcctttttt 2704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 23463792 - 23463744
Alignment:
Q  122 tctataactattaattaagacaaaacattgttttggtgtagcctttttt 170  Q
    |||||| |||||||| ||| ||| || ||||||||||||||||||||||    
T  23463792 tctatacctattaataaaggcaatactttgttttggtgtagcctttttt 23463744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 22 times since January 2019
Visitors: 3264