View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_19 (Length: 269)
Name: NF0445_1D_low_19
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 31206444 - 31206649
Alignment:
| Q |
7 |
aaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttccacttgtttcc |
106 |
Q |
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| T |
31206444 |
aaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttccacttgtttcc |
31206543 |
T |
|
| Q |
107 |
tataccttgtttagttgttggagaattgaaagaacgatatgtagcattcacattgatttctttttgagctgaggcaagtgctagaacacaaaatatcaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||| |
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| T |
31206544 |
tataccttgtttagttgttggagaattgaaagaacgatatgtagcattcacattgatttcactttgagctgaggccaatactagaacacaaaatatcaac |
31206643 |
T |
|
| Q |
207 |
accaaa |
212 |
Q |
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|||||| |
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| T |
31206644 |
accaaa |
31206649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 31175107 - 31175312
Alignment:
| Q |
7 |
aaaaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttccacttgtttcc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||| |||||||||||||||||||||||| |
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| T |
31175107 |
aaaaggcagcccaaccatatttgcttcgccatgacaatggtttgttaccatcttgagctgcacagaacacacctgatgtgttcaagttccacttgtttcc |
31175206 |
T |
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| Q |
107 |
tataccttgtttagttgttggagaattgaaagaacgatatgtagcattcacattgatttctttttgagctgaggcaagtgctagaacacaaaatatcaac |
206 |
Q |
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| T |
31175207 |
tataccttgtttagtttgtgttaaattgaaagactgatatgtagcagtcacattgtttgcactttgagctgaggccaatgctagaacacaaaatatcaac |
31175306 |
T |
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| Q |
207 |
accaaa |
212 |
Q |
| |
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|||||| |
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| T |
31175307 |
accaaa |
31175312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 31143301 - 31143389
Alignment:
| Q |
9 |
aaggcagcccaaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttcca |
97 |
Q |
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||||||||||||||| ||| || |||||||||||||||||||||||||| |||| |||||| || ||||| | ||||||||||||||| |
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| T |
31143301 |
aaggcagcccaaccaaattcactacgccatgacaatgatttgttcccatcctgagctgcacaaaatacaccagatgtgttcaagttcca |
31143389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 31192617 - 31192693
Alignment:
| Q |
19 |
aaccatatttgcttcgccatgacaatgatttgttcccatcttgagatgcacataacacacctgctgtgttcaagttc |
95 |
Q |
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| T |
31192617 |
aaccatatttgcttggccatgaaaatgatttgtttccatcctgagctgcacataatacacctgatgtgttcaagttc |
31192693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 31192737 - 31192780
Alignment:
| Q |
169 |
tttgagctgaggcaagtgctagaacacaaaatatcaacaccaaa |
212 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
31192737 |
tttgagctgaggccaatgctagaacacaaaatatcaacaccaaa |
31192780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 31143443 - 31143483
Alignment:
| Q |
169 |
tttgagctgaggcaagtgctagaacacaaaatatcaacacc |
209 |
Q |
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||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
31143443 |
tttgagcagatgcaagtgctagaacacaaaatatcaacacc |
31143483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 42667660 - 42667708
Alignment:
| Q |
215 |
cgataacggttaacatgagtatcatcgctaaatcgccactgttcatctc |
263 |
Q |
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| T |
42667660 |
cgataacggttaacatgagtatcatcgctaaatcgccactgttcatctc |
42667708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 35939852 - 35939888
Alignment:
| Q |
7 |
aaaaggcagcccaaccatatttgcttcgccatgacaa |
43 |
Q |
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||||||||| ||||||||||||||| ||||||||||| |
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| T |
35939852 |
aaaaggcagtccaaccatatttgctacgccatgacaa |
35939888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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