View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_1D_low_21 (Length: 266)

Name: NF0445_1D_low_21
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_1D_low_21
NF0445_1D_low_21
[»] chr1 (5 HSPs)
chr1 (40-178)||(6521754-6521892)
chr1 (92-178)||(47778072-47778158)
chr1 (100-178)||(6506903-6506981)
chr1 (92-178)||(47788194-47788280)
chr1 (117-156)||(6517220-6517259)
[»] chr3 (1 HSPs)
chr3 (174-262)||(47269482-47269570)
[»] scaffold0341 (2 HSPs)
scaffold0341 (100-178)||(928-1006)
scaffold0341 (100-178)||(8581-8659)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 40 - 178
Target Start/End: Complemental strand, 6521892 - 6521754
Alignment:
Q  40 ttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttg 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521892 ttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttg 6521793  T
Q  140 agtagcgcaacatgcattcttcatcgttgtaccatccaa 178  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6521792 agtaacgcaacatgcattcttcatcgttgtaccatccaa 6521754  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 47778158 - 47778072
Alignment:
Q  92 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaa 178  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| ||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaa 47778072  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 6506903 - 6506981
Alignment:
Q  100 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaa 178  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaa 6506981  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 47788280 - 47788194
Alignment:
Q  92 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaa 178  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | |||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaa 47788194  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 6517220 - 6517259
Alignment:
Q  117 gagaccaaatattgaacggtttgagtagcgcaacatgcat 156  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcat 6517259  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 47269570 - 47269482
Alignment:
Q  174 tccaagtgaatttgtatcaaattgtttattgctcttatttctgaatatagtgatcaccaatcactgagtactgttgttgatatggtaac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  47269570 tccaagtgaatttgtatcaaattgtttattgctcttatttctgaatacagtgatcaccaatcactgagtactgttgtcgatatggtaac 47269482  T

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Target: scaffold0341 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 928 - 1006
Alignment:
Q  100 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaa 178  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaa 1006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 8581 - 8659
Alignment:
Q  100 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaa 178  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaa 8659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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