View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_1D_low_24 (Length: 243)

Name: NF0445_1D_low_24
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_1D_low_24
NF0445_1D_low_24
[»] chr4 (11 HSPs)
chr4 (13-243)||(25844126-25844352)
chr4 (159-217)||(11548167-11548225)
chr4 (159-228)||(40423324-40423393)
chr4 (159-218)||(79525-79584)
chr4 (165-218)||(5244565-5244617)
chr4 (162-243)||(5961769-5961850)
chr4 (159-220)||(11444897-11444957)
chr4 (159-243)||(43115582-43115666)
chr4 (160-211)||(25844390-25844441)
chr4 (183-216)||(19689290-19689323)
chr4 (183-232)||(40421948-40421997)
[»] chr7 (17 HSPs)
chr7 (159-232)||(25690718-25690791)
chr7 (159-243)||(16780773-16780857)
chr7 (159-230)||(41195695-41195766)
chr7 (159-217)||(35851974-35852032)
chr7 (161-229)||(45773203-45773271)
chr7 (160-243)||(31726653-31726736)
chr7 (159-243)||(5721673-5721757)
chr7 (159-219)||(11754696-11754756)
chr7 (157-213)||(48078598-48078654)
chr7 (161-216)||(11329505-11329560)
chr7 (157-214)||(5815121-5815178)
chr7 (157-218)||(22600659-22600720)
chr7 (159-219)||(28557249-28557309)
chr7 (159-230)||(101300-101371)
chr7 (198-243)||(45773257-45773303)
chr7 (100-141)||(30357979-30358020)
chr7 (100-129)||(48078705-48078734)
[»] chr3 (7 HSPs)
chr3 (159-230)||(25258079-25258150)
chr3 (159-243)||(12767337-12767421)
chr3 (154-218)||(27177336-27177400)
chr3 (162-215)||(40413445-40413498)
chr3 (175-243)||(5182245-5182313)
chr3 (159-211)||(37058992-37059044)
chr3 (159-199)||(54905139-54905179)
[»] chr5 (4 HSPs)
chr5 (160-234)||(896066-896140)
chr5 (165-232)||(18398578-18398645)
chr5 (162-217)||(9962929-9962984)
chr5 (159-211)||(14105979-14106031)
[»] chr8 (12 HSPs)
chr8 (159-230)||(38924402-38924473)
chr8 (158-230)||(8238754-8238826)
chr8 (160-243)||(30370054-30370137)
chr8 (159-218)||(32729430-32729489)
chr8 (159-213)||(34273140-34273194)
chr8 (159-243)||(29204594-29204678)
chr8 (169-219)||(36203388-36203438)
chr8 (159-216)||(9030606-9030663)
chr8 (168-213)||(14178904-14178949)
chr8 (160-229)||(33357365-33357434)
chr8 (159-191)||(33435410-33435442)
chr8 (159-219)||(33542104-33542163)
[»] chr1 (10 HSPs)
chr1 (158-216)||(1831257-1831315)
chr1 (159-242)||(25484937-25485020)
chr1 (159-230)||(34123183-34123254)
chr1 (162-243)||(34062638-34062719)
chr1 (163-220)||(42826424-42826480)
chr1 (162-213)||(5760058-5760109)
chr1 (159-214)||(24603070-24603125)
chr1 (157-191)||(9450238-9450272)
chr1 (174-219)||(768312-768357)
chr1 (157-205)||(32191156-32191204)
[»] chr2 (11 HSPs)
chr2 (159-228)||(12670772-12670841)
chr2 (159-243)||(33710567-33710651)
chr2 (159-215)||(21488865-21488921)
chr2 (159-214)||(15538954-15539009)
chr2 (158-219)||(14442111-14442172)
chr2 (162-214)||(11279985-11280037)
chr2 (159-214)||(28314674-28314729)
chr2 (162-217)||(37172605-37172660)
chr2 (169-243)||(7152082-7152156)
chr2 (159-243)||(4422823-4422907)
chr2 (183-243)||(23465779-23465839)
[»] scaffold0110 (1 HSPs)
scaffold0110 (162-226)||(31409-31473)
[»] chr6 (3 HSPs)
chr6 (160-232)||(33617651-33617723)
chr6 (159-221)||(22682570-22682633)
chr6 (159-243)||(32820778-32820862)
[»] scaffold0223 (1 HSPs)
scaffold0223 (162-219)||(16329-16386)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 25844126 - 25844352
Alignment:
Q  13 tgaaccatgatacctagcttcttacccttgcatggttaagaatttgagtatgttgggcaactttagctcaaatagctattctcgataaaaattgttcttc 112  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25844126 tgaaccgtaatacctagcttcttacccttgcatggttgagaatttgagtatgttgggcaactttagctcaaatagctattctcgataaaaattgttcttc 25844225  T
Q  113 tcccttttaaaattattaaatcccttaattcagcgtgagaagccggcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaag 212  Q
    |||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25844226 tcccttttaaaattattaaatcccttaattcagcgtgag----tggcacttttaagatcggttgaaccggcttaaaaagcgattgaatcaatcttaaaag 25844321  T
Q  213 tgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||||||| |||||||||||||||||||||    
T  25844322 tgtcagcatgagttaactcaaactgaaaaat 25844352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 11548167 - 11548225
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtca 217  Q
    ||||||||| |||||| |||||| |||||||||||| |||||| |||||||||||||||    
T  11548167 cacttttaacatcggtcgaaccgacttaaaaagcgaatgaaccgatcttaaaagtgtca 11548225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 40423324 - 40423393
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaa 228  Q
    ||||||||||||  ||||||||| ||||||||| ||||||||| ||||||||| ||||||| | ||||||    
T  40423324 cacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaaattgtcagcgtgagttaa 40423393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 79525 - 79584
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcag 218  Q
    ||||||||||||| ||||| ||| ||||||||| ||||||||| |||| |||||||||||    
T  79525 cacttttaagatcagttgacccgacttaaaaagtgattgaaccgatctaaaaagtgtcag 79584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 5244617 - 5244565
Alignment:
Q  165 taagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcag 218  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  5244617 taagatcggttgaactgacttaaaa-gcgattgaaccaatcttaaaaatgtcag 5244565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 5961850 - 5961769
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||||||||| ||  ||||||||| ||||||||  |||||||||||| ||  | |||||||||| |||| ||||||    
T  5961850 ttttaagatcggttgagccaacttaaaaagtgattgaactgatcttaaaagtgccaatagaagttaactctaactaaaaaat 5961769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 11444957 - 11444897
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagca 220  Q
    ||||||||| |||||| |||| | |||||||||||| |||||| ||||||||||||||||||    
T  11444957 cacttttaacatcggtcgaac-gacttaaaaagcgaatgaaccgatcttaaaagtgtcagca 11444897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 43115666 - 43115582
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||| |||| | |||||||||| ||||||||   |||||||| ||||||||||||||||  | ||||||||||  |||||||||    
T  43115666 cacttctaaggttggttgaaccgacttaaaaaattattgaaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaat 43115582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 25844390 - 25844441
Alignment:
Q  160 acttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaa 211  Q
    |||||||| || ||||||| ||||||||||||  ||||||||||||||||||    
T  25844390 acttttaaaattggttgaaacggcttaaaaagttattgaaccaatcttaaaa 25844441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 19689290 - 19689323
Alignment:
Q  183 cttaaaaagcgattgaaccaatcttaaaagtgtc 216  Q
    ||||||||| ||||||||||||||||||||||||    
T  19689290 cttaaaaagtgattgaaccaatcttaaaagtgtc 19689323  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 40421948 - 40421997
Alignment:
Q  183 cttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactca 232  Q
    ||||||||| |||||||| |||||||||||||||||  | ||||||||||    
T  40421948 cttaaaaagtgattgaactaatcttaaaagtgtcagtgtgagttaactca 40421997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 25690791 - 25690718
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactca 232  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| | ||||||||||    
T  25690791 cacttttaagatcggttgaaccggcttaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaactca 25690718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 16780773 - 16780857
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||||||||||||| || ||||||||| ||||||||| |||||||||||| | || ||||||||||||  |||||||||    
T  16780773 cacttttaagatcggttgaatcgacttaaaaagtgattgaaccgatcttaaaagtgcccgcgtaagttaactcatgctgaaaaat 16780857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 41195766 - 41195695
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaact 230  Q
    ||||||||||||| |||||||| |||||||||| ||||||| ||| ||||||||||||||| | ||||||||    
T  41195766 cacttttaagatcagttgaaccagcttaaaaagtgattgaatcaaccttaaaagtgtcagcgtgagttaact 41195695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 35851974 - 35852032
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtca 217  Q
    ||||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||    
T  35851974 cacttttaagatcggttgaaccgacttagaaagtgattgaaccgatcttaaaagtgtca 35852032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 45773271 - 45773203
Alignment:
Q  161 cttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaac 229  Q
    |||||||||| |||||||||||| ||||||| ||||||||| |||| |||||||||||| | |||||||    
T  45773271 cttttaagattggttgaaccggcgtaaaaagtgattgaaccgatctaaaaagtgtcagcgtgagttaac 45773203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 31726653 - 31726736
Alignment:
Q  160 acttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||||||||||||||||||||||||||||   ||||||||| | ||||||||||| ||  |||||||||| |  |||||||||    
T  31726653 acttttaagatcggttgaaccggcttaaaatatgattgaaccgaacttaaaagtgttagtgtaagttaacttatgctgaaaaat 31726736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 5721757 - 5721673
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||||||||||||||||  || |||||  |||||| | ||||||||||| ||| | | ||||||||| |||||||||||    
T  5721757 cacttttaagatcggttgaaccgatttgaaaagtaattgaatcgatcttaaaagtctcatcgtgagttaactctaactgaaaaat 5721673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 11754696 - 11754756
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    |||||||||||| ||||||||||   ||||||| ||||||||| |||||||||||||||||    
T  11754696 cacttttaagattggttgaaccgagataaaaagtgattgaaccgatcttaaaagtgtcagc 11754756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 48078654 - 48078598
Alignment:
Q  157 ggcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagt 213  Q
    ||||||||||||||||||||||||| ||||||||| |||||||   |||||||||||    
T  48078654 ggcacttttaagatcggttgaaccgacttaaaaagtgattgaattgatcttaaaagt 48078598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 11329560 - 11329505
Alignment:
Q  161 cttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtc 216  Q
    ||||||||||||||| ||||| ||||||||| ||| ||| ||||||||||||||||    
T  11329560 cttttaagatcggttaaaccgacttaaaaagtgatcgaatcaatcttaaaagtgtc 11329505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 5815121 - 5815178
Alignment:
Q  157 ggcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtg 214  Q
    ||||||||||||||||||||| | | ||||||||| |||||||||||| | |||||||    
T  5815121 ggcacttttaagatcggttgacctgacttaaaaagtgattgaaccaatttaaaaagtg 5815178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 22600720 - 22600659
Alignment:
Q  157 ggcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcag 218  Q
    |||||| ||||||| ||||||||||||||||||||  |||||| | ||||||||| ||||||    
T  22600720 ggcactattaagattggttgaaccggcttaaaaagtaattgaatcgatcttaaaaatgtcag 22600659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 28557249 - 28557309
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    ||||||||||||| ||||||| || ||||||   ||||||||| |||||||||||||||||    
T  28557249 cacttttaagatcagttgaactgggttaaaatatgattgaaccgatcttaaaagtgtcagc 28557309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 101300 - 101371
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaact 230  Q
    ||||||||||||||||||| | | ||||||||| ||||||||  |||| |||||||  ||||| ||||||||    
T  101300 cacttttaagatcggttgacctgacttaaaaagtgattgaactgatctaaaaagtgctagcatgagttaact 101371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 45773257 - 45773303
Alignment:
Q  198 aaccaatcttaaaagtgtcagcataagtt-aactcaaactgaaaaat 243  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  45773257 aaccaatcttaaaagcgtcagcataagttaaactcacactgaaaaat 45773303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 30358020 - 30357979
Alignment:
Q  100 aaaattgttcttctcccttttaaaattattaaatcccttaat 141  Q
    ||||||||||||||||||||||||||| || | |||||||||    
T  30358020 aaaattgttcttctcccttttaaaatttttcattcccttaat 30357979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 129
Target Start/End: Complemental strand, 48078734 - 48078705
Alignment:
Q  100 aaaattgttcttctcccttttaaaattatt 129  Q
    ||||||||||||||||||||||||||||||    
T  48078734 aaaattgttcttctcccttttaaaattatt 48078705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 25258079 - 25258150
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaact 230  Q
    ||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||  ||||||||    
T  25258079 cacttttaagatcggttgaaccgacttaaaaagtgattgaactgatcttaaaagtgtcagcaacagttaact 25258150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 12767337 - 12767421
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||| ||||||||||||| ||| ||||||||| ||||||| | ||||||||||||| ||| | |||||||||||  ||||||||    
T  12767337 cacttctaagatcggttgatccgacttaaaaagtgattgaaacgatcttaaaagtgttagcgtgagttaactcaagttgaaaaat 12767421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 27177400 - 27177336
Alignment:
Q  154 gccggcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcag 218  Q
    |||| ||||||||||||||||||| ||  ||||||||  ||||||||| |||| |||||||||||    
T  27177400 gccgacacttttaagatcggttgacccaacttaaaaaatgattgaaccgatctaaaaagtgtcag 27177336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 40413445 - 40413498
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgt 215  Q
    |||||||||||||||| ||| ||||||||| ||||||||| |||| || |||||    
T  40413445 ttttaagatcggttgacccgacttaaaaagtgattgaaccgatctcaatagtgt 40413498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 5182245 - 5182313
Alignment:
Q  175 tgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||||||||||||||  ||||||||  ||| ||||||||||||| | |||||| ||| ||| ||||||    
T  5182245 tgaaccggcttaaaaattgattgaactgatcataaaagtgtcagcgtgagttaaatcacactaaaaaat 5182313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 37058992 - 37059044
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaa 211  Q
    |||||||||||||||||||| || ||||||||  ||||||| | |||||||||    
T  37058992 cacttttaagatcggttgaatcgacttaaaaaatgattgaatcgatcttaaaa 37059044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 54905179 - 54905139
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaa 199  Q
    ||||||||||||||||| ||||| ||||||||| |||||||    
T  54905179 cacttttaagatcggttaaaccgacttaaaaagtgattgaa 54905139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 896140 - 896066
Alignment:
Q  160 acttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaa 234  Q
    ||||||||||||  ||||||||| |||||||| |||||||||||| ||| ||| |||||||||||||||||||||    
T  896140 acttttaagatcaattgaaccggtttaaaaagtgattgaaccaattttacaagcgtcagcataagttaactcaaa 896066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 18398578 - 18398645
Alignment:
Q  165 taagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactca 232  Q
    |||||||||||||||||| |||||||| || |||||| ||||||||||||||||  ||||||||||||    
T  18398578 taagatcggttgaaccggtttaaaaagtgaatgaaccgatcttaaaagtgtcagtgtaagttaactca 18398645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 9962929 - 9962984
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtca 217  Q
    ||||||||||||||||||| | || ||||| ||||||| |||||||||||||||||    
T  9962929 ttttaagatcggttgaaccagattgaaaagtgattgaatcaatcttaaaagtgtca 9962984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 14105979 - 14106031
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaa 211  Q
    ||||||||||||||||  ||||  ||||||||| ||||||||| |||||||||    
T  14105979 cacttttaagatcggtcaaaccaacttaaaaagtgattgaaccgatcttaaaa 14106031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 38924473 - 38924402
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaact 230  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||| |||||  ||||||||    
T  38924473 cacttttaagatcagttgaaccgacttaaaaagtgattgaaccgatcttaaaagtgccagcacgagttaact 38924402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 8238826 - 8238754
Alignment:
Q  158 gcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaact 230  Q
    |||||||||||||||||||| ||| || |||||| ||||||||  |||| |||||||||||| | ||||||||    
T  8238826 gcacttttaagatcggttgatccgactaaaaaagtgattgaactgatctaaaaagtgtcagcgtgagttaact 8238754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 30370054 - 30370137
Alignment:
Q  160 acttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||| ||||||||||||  ||||||||| ||||||||| ||| |||| ||| |||||  ||||||||| || ||||||||    
T  30370054 acttttaaaatcggttgaaccaacttaaaaagtgattgaaccgatcataaatgtgccagcaggagttaactccaaatgaaaaat 30370137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 32729489 - 32729430
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcag 218  Q
    ||||||||||||||||||||||| ||||||||   |||||||  ||||||||||||||||    
T  32729489 cacttttaagatcggttgaaccgacttaaaaaataattgaactgatcttaaaagtgtcag 32729430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 34273140 - 34273194
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagt 213  Q
    ||||||||| ||||||||||||| |||||| || ||||||||| |||||||||||    
T  34273140 cacttttaaaatcggttgaaccgacttaaacagtgattgaaccgatcttaaaagt 34273194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 29204678 - 29204594
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||||||||||| ||||| ||| ||||||||| ||||||||| || ||||||||   ||| | | |||||||| ||||||||||    
T  29204678 cacttttaagatcagttgatccgacttaaaaagtgattgaaccgattttaaaagtactagcgtgaattaactcacactgaaaaat 29204594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 36203388 - 36203438
Alignment:
Q  169 atcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    ||||||||||||| |||| |||| ||||||  |||||||||||||||||||    
T  36203388 atcggttgaaccgacttataaagtgattgagtcaatcttaaaagtgtcagc 36203438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 9030663 - 9030606
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtc 216  Q
    |||||||||||||  ||||||||  |||||||| ||||||| | ||||||||||||||    
T  9030663 cacttttaagatcaattgaaccgatttaaaaagtgattgaatcgatcttaaaagtgtc 9030606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 14178904 - 14178949
Alignment:
Q  168 gatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagt 213  Q
    |||||||||| ||| | ||||||| |||||||||||||||||||||    
T  14178904 gatcggttgagccgacataaaaagtgattgaaccaatcttaaaagt 14178949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 33357365 - 33357434
Alignment:
Q  160 acttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaac 229  Q
    |||||||| ||| ||| |||||| |||||||   ||||||||||||||||||||| || ||| |||||||    
T  33357365 acttttaaaatcagttaaaccggtttaaaaaataattgaaccaatcttaaaagtggcaacatgagttaac 33357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 33435410 - 33435442
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaag 191  Q
    ||||||||||||||||||||||| |||||||||    
T  33435410 cacttttaagatcggttgaaccgacttaaaaag 33435442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 33542104 - 33542163
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    |||||||||||||||||||| || ||||||||  || ||||| ||||||||||| ||||||    
T  33542104 cacttttaagatcggttgaa-cgacttaaaaaatgactgaactaatcttaaaagggtcagc 33542163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 1831257 - 1831315
Alignment:
Q  158 gcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtc 216  Q
    |||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||    
T  1831257 gcacttttaagatcagttgaaccgacttaaaaagcgattaaaccgatcttaaaagtgtc 1831315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 25485020 - 25484937
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaa 242  Q
    |||||||||||||| |||||  ||||||||||| |||||||   |||||||||||| |||| ||| |||||||| |||||||||    
T  25485020 cacttttaagatcgtttgaattggcttaaaaagtgattgaattgatcttaaaagtgccagcgtaaattaactcacactgaaaaa 25484937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 34123183 - 34123254
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaact 230  Q
    ||||||||| |||||||||||| |||||||||| ||||||    || ||||||||| |||||||||||||||    
T  34123183 cacttttaaaatcggttgaaccagcttaaaaagtgattgagttgatattaaaagtgccagcataagttaact 34123254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 34062719 - 34062638
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||| ||| |||||| || ||||||||| ||||||||| || |||||||||||||| | |||| |||||  |||||||||    
T  34062719 ttttaaaatcagttgaaacgacttaaaaagtgattgaaccgattttaaaagtgtcagcgtgagttcactcacgctgaaaaat 34062638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 42826424 - 42826480
Alignment:
Q  163 tttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagca 220  Q
    |||||||| |||| ||||| ||||||||| |||||||||| |||||||||||||||||    
T  42826424 tttaagattggttaaaccgacttaaaaagtgattgaacca-tcttaaaagtgtcagca 42826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 5760109 - 5760058
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagt 213  Q
    ||||||||||||||||| || ||||||||| ||||||| | |||||||||||    
T  5760109 ttttaagatcggttgaagcgacttaaaaagtgattgaagcgatcttaaaagt 5760058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 24603070 - 24603125
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtg 214  Q
    |||||||||||||||||||||| |||||||||   | |||||| ||||||||||||    
T  24603070 cacttttaagatcggttgaaccagcttaaaaaattagtgaaccgatcttaaaagtg 24603125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 9450272 - 9450238
Alignment:
Q  157 ggcacttttaagatcggttgaaccggcttaaaaag 191  Q
    ||||||||||||||||||||||||| |||||||||    
T  9450272 ggcacttttaagatcggttgaaccgacttaaaaag 9450238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 768312 - 768357
Alignment:
Q  174 ttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    |||||||| ||||||||| ||||||||  |||||||||||||||||    
T  768312 ttgaaccgacttaaaaagtgattgaactgatcttaaaagtgtcagc 768357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 32191156 - 32191204
Alignment:
Q  157 ggcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatc 205  Q
    ||||||||||||||||||||||||  ||||||||  |||||||| ||||    
T  32191156 ggcacttttaagatcggttgaaccaacttaaaaaatgattgaactaatc 32191204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 12670841 - 12670772
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaa 228  Q
    |||||||||||||||||||  |||||||||||  ||||||||| ||||||||||||||||| | ||||||    
T  12670841 cacttttaagatcggttgagtcggcttaaaaattgattgaaccgatcttaaaagtgtcagcgtgagttaa 12670772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 33710651 - 33710567
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||||| | ||||| ||| ||| |||  ||||||||| ||||||||||||||||| ||||||||||||  |||||||||    
T  33710651 cacttttaagattgtttgaatcggtttagaaaatgattgaaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaat 33710567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 21488921 - 21488865
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgt 215  Q
    ||||||||||||||||||||| | ||||||||  ||||||||| |||||||||||||    
T  21488921 cacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaaagtgt 21488865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 15539009 - 15538954
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtg 214  Q
    |||||||||||||| |||||||| |||||||||  |||||||| ||||||||||||    
T  15539009 cacttttaagatcgattgaaccgacttaaaaagtaattgaaccgatcttaaaagtg 15538954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 14442172 - 14442111
Alignment:
Q  158 gcacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    |||| ||||||||| |||||| |||||||||||| ||||| ||  |||||||||||||||||    
T  14442172 gcacctttaagatcagttgaatcggcttaaaaagtgattgtactgatcttaaaagtgtcagc 14442111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 11279985 - 11280037
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtg 214  Q
    |||||| ||||||||||||| ||||||||| |||||| ||||| |||||||||    
T  11279985 ttttaaaatcggttgaaccgacttaaaaagtgattgatccaattttaaaagtg 11280037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 28314674 - 28314729
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtg 214  Q
    ||||||||||||||||| ||||   |||||||| ||||||||| ||||||||||||    
T  28314674 cacttttaagatcggttcaaccaatttaaaaagtgattgaaccgatcttaaaagtg 28314729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 37172605 - 37172660
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtca 217  Q
    ||||||||| |||||||| | ||||||||| ||||||||| || ||||||||||||    
T  37172605 ttttaagattggttgaactgacttaaaaagtgattgaaccgatgttaaaagtgtca 37172660  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 7152156 - 7152082
Alignment:
Q  169 atcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||||||| ||||||||  |||||||| || |||||||||| | | | ||||||||||  |||||||||    
T  7152156 atcggttgaaccggtttaaaaagtaattgaaccgatattaaaagtgttaacgtgagttaactcacgctgaaaaat 7152082  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 4422823 - 4422907
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||||||||||||  || ||||||||| |||||| || |||| ||||||| | || | ||||||||   ||||||||||    
T  4422823 cacttttaagatcggttgattcgacttaaaaagtgattgagccgatctaaaaagtgacggcgtgagttaactatcactgaaaaat 4422907  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 23465779 - 23465839
Alignment:
Q  183 cttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    |||||||||  |||||||| ||||||||||||||| | |||||||||| |  |||||||||    
T  23465779 cttaaaaagtaattgaaccgatcttaaaagtgtcatcgtaagttaacttacgctgaaaaat 23465839  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 31409 - 31473
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagtt 226  Q
    ||||||||| ||||||||| |||||||||| |||||| || |||||||||||| |||||||||||    
T  31409 ttttaagattggttgaaccagcttaaaaagtgattgagccgatcttaaaagtgccagcataagtt 31473  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 33617723 - 33617651
Alignment:
Q  160 acttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactca 232  Q
    ||||||||||||| ||||||||| |||  ||| ||||||||| ||||||||| ||||||| | ||||||||||    
T  33617723 acttttaagatcgattgaaccggattagcaagtgattgaaccgatcttaaaaatgtcagcgtgagttaactca 33617651  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 22682633 - 22682570
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaac-caatcttaaaagtgtcagcat 221  Q
    ||||||||||||||||||||||  ||||||||  ||||||||   |||||||||||||||||||    
T  22682633 cacttttaagatcggttgaaccaacttaaaaaatgattgaacaggatcttaaaagtgtcagcat 22682570  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 32820862 - 32820778
Alignment:
Q  159 cacttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagcataagttaactcaaactgaaaaat 243  Q
    ||||||||| ||| ||||||||  ||||||||| |  |||||| ||||||| ||||||||    ||||||||| |||||||||||    
T  32820862 cacttttaacatcagttgaaccaacttaaaaagtgtctgaaccgatcttaatagtgtcagtgggagttaactctaactgaaaaat 32820778  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 16386 - 16329
Alignment:
Q  162 ttttaagatcggttgaaccggcttaaaaagcgattgaaccaatcttaaaagtgtcagc 219  Q
    ||||||||||||||||||||  ||||||||  ||||||||  ||||||||||| ||||    
T  16386 ttttaagatcggttgaaccgatttaaaaagtaattgaaccggtcttaaaagtgacagc 16329  T

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