View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_1D_low_26 (Length: 238)

Name: NF0445_1D_low_26
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_1D_low_26
NF0445_1D_low_26
[»] chr5 (32 HSPs)
chr5 (1-216)||(38816724-38816932)
chr5 (6-81)||(19820428-19820503)
chr5 (14-81)||(22013364-22013431)
chr5 (7-81)||(42469171-42469245)
chr5 (7-56)||(15410483-15410532)
chr5 (7-59)||(6326332-6326384)
chr5 (8-66)||(15382442-15382500)
chr5 (9-42)||(6035472-6035505)
chr5 (6-59)||(21191090-21191143)
chr5 (14-81)||(2436878-2436939)
chr5 (6-42)||(3966492-3966528)
chr5 (6-42)||(17123037-17123073)
chr5 (15-59)||(21522722-21522766)
chr5 (15-59)||(21533288-21533332)
chr5 (6-42)||(27144452-27144488)
chr5 (6-81)||(6247572-6247647)
chr5 (6-49)||(14674251-14674294)
chr5 (6-49)||(19579683-19579726)
chr5 (7-66)||(21137654-21137713)
chr5 (6-49)||(34879332-34879375)
chr5 (7-49)||(5873548-5873590)
chr5 (4-42)||(11685928-11685966)
chr5 (7-37)||(27932229-27932259)
chr5 (6-40)||(28588708-28588742)
chr5 (13-59)||(36642803-36642849)
chr5 (6-55)||(19552577-19552626)
chr5 (6-55)||(22423846-22423895)
chr5 (8-81)||(30135264-30135336)
chr5 (4-33)||(32766975-32767004)
chr5 (14-83)||(37328886-37328955)
chr5 (6-66)||(13287433-13287493)
chr5 (6-42)||(31084312-31084348)
[»] chr7 (32 HSPs)
chr7 (7-81)||(27944991-27945065)
chr7 (7-81)||(24105629-24105702)
chr7 (6-59)||(11722132-11722185)
chr7 (6-66)||(1433419-1433479)
chr7 (6-42)||(32308109-32308145)
chr7 (10-81)||(2034392-2034462)
chr7 (6-57)||(2425767-2425818)
chr7 (7-86)||(7328726-7328805)
chr7 (6-81)||(43027503-43027578)
chr7 (7-66)||(43249958-43250017)
chr7 (6-48)||(8046061-8046103)
chr7 (6-56)||(19206025-19206075)
chr7 (6-48)||(23191879-23191921)
chr7 (6-68)||(24339605-24339667)
chr7 (6-56)||(26733279-26733329)
chr7 (8-57)||(49107795-49107844)
chr7 (6-42)||(20549780-20549816)
chr7 (6-38)||(29787403-29787435)
chr7 (6-45)||(2948669-2948708)
chr7 (6-49)||(21828439-21828482)
chr7 (7-42)||(22484014-22484049)
chr7 (7-38)||(28155563-28155594)
chr7 (6-80)||(598160-598233)
chr7 (7-57)||(5235960-5236010)
chr7 (6-48)||(20545270-20545312)
chr7 (8-66)||(26329418-26329476)
chr7 (8-57)||(4017830-4017879)
chr7 (9-42)||(6630949-6630982)
chr7 (9-42)||(25791642-25791675)
chr7 (6-58)||(11061110-11061162)
chr7 (6-66)||(17851396-17851456)
chr7 (6-42)||(22868031-22868067)
[»] chr6 (38 HSPs)
chr6 (6-66)||(9027143-9027203)
chr6 (6-81)||(853893-853968)
chr6 (6-66)||(5000660-5000720)
chr6 (13-81)||(8365560-8365628)
chr6 (7-79)||(12696277-12696348)
chr6 (6-57)||(9629357-9629408)
chr6 (4-59)||(10294079-10294134)
chr6 (6-81)||(30866178-30866253)
chr6 (7-81)||(6389693-6389767)
chr6 (6-56)||(9658854-9658904)
chr6 (6-44)||(19040339-19040377)
chr6 (13-81)||(3398569-3398637)
chr6 (6-66)||(5732544-5732604)
chr6 (6-66)||(7938081-7938141)
chr6 (6-66)||(9107404-9107464)
chr6 (7-55)||(13851712-13851760)
chr6 (6-66)||(16766662-16766722)
chr6 (7-66)||(7977865-7977924)
chr6 (6-49)||(20371144-20371187)
chr6 (6-59)||(426548-426601)
chr6 (6-47)||(7265627-7265668)
chr6 (6-58)||(8777007-8777059)
chr6 (6-66)||(34073381-34073441)
chr6 (6-66)||(34595099-34595159)
chr6 (6-49)||(17841623-17841666)
chr6 (7-81)||(25038106-25038180)
chr6 (6-80)||(31959111-31959184)
chr6 (6-39)||(10842524-10842557)
chr6 (6-42)||(677826-677862)
chr6 (8-81)||(4877890-4877965)
chr6 (6-82)||(7930254-7930330)
chr6 (6-42)||(7996412-7996448)
chr6 (6-42)||(8022353-8022389)
chr6 (6-42)||(10339160-10339196)
chr6 (6-58)||(16833281-16833333)
chr6 (6-42)||(17341698-17341734)
chr6 (7-39)||(21395342-21395374)
chr6 (6-42)||(21424836-21424872)
[»] scaffold0306 (1 HSPs)
scaffold0306 (6-82)||(13349-13425)
[»] scaffold0152 (1 HSPs)
scaffold0152 (6-82)||(21902-21978)
[»] chr8 (19 HSPs)
chr8 (13-81)||(25192388-25192456)
chr8 (6-72)||(926822-926888)
chr8 (6-64)||(29510338-29510396)
chr8 (6-59)||(22651948-22652001)
chr8 (6-59)||(27213519-27213572)
chr8 (13-81)||(126390-126457)
chr8 (6-81)||(13436998-13437073)
chr8 (6-49)||(31109552-31109595)
chr8 (6-68)||(24362236-24362298)
chr8 (6-39)||(39954313-39954346)
chr8 (6-46)||(31236611-31236651)
chr8 (6-81)||(4298920-4298994)
chr8 (6-81)||(11944615-11944690)
chr8 (6-68)||(4673459-4673521)
chr8 (6-40)||(27101506-27101540)
chr8 (6-48)||(34897068-34897110)
chr8 (6-39)||(13844630-13844663)
chr8 (6-66)||(2572090-2572150)
chr8 (6-58)||(20873042-20873094)
[»] chr2 (24 HSPs)
chr2 (17-81)||(33519736-33519800)
chr2 (6-81)||(20539708-20539783)
chr2 (6-81)||(21782852-21782927)
chr2 (6-56)||(21616737-21616787)
chr2 (8-81)||(19536434-19536507)
chr2 (9-82)||(23717976-23718048)
chr2 (9-82)||(24105648-24105720)
chr2 (15-80)||(21624217-21624282)
chr2 (6-66)||(4332891-4332951)
chr2 (6-66)||(18276486-18276546)
chr2 (6-41)||(37411278-37411313)
chr2 (6-80)||(38117193-38117261)
chr2 (8-82)||(14996260-14996333)
chr2 (6-44)||(18420468-18420506)
chr2 (7-82)||(21374734-21374810)
chr2 (6-64)||(31018557-31018615)
chr2 (6-56)||(36409661-36409711)
chr2 (7-68)||(4142875-4142936)
chr2 (7-48)||(21091706-21091747)
chr2 (6-42)||(896200-896236)
chr2 (7-55)||(10535794-10535842)
chr2 (6-58)||(30404884-30404936)
chr2 (6-38)||(31284041-31284073)
chr2 (7-39)||(42832311-42832343)
[»] chr1 (33 HSPs)
chr1 (6-58)||(6427323-6427375)
chr1 (6-66)||(40917716-40917776)
chr1 (6-65)||(398799-398858)
chr1 (6-58)||(2896155-2896207)
chr1 (7-82)||(5376535-5376609)
chr1 (6-81)||(5927374-5927449)
chr1 (6-73)||(10572623-10572690)
chr1 (6-50)||(12443494-12443538)
chr1 (6-42)||(17831565-17831601)
chr1 (6-42)||(36878450-36878486)
chr1 (13-68)||(48040503-48040558)
chr1 (6-56)||(9709795-9709845)
chr1 (6-56)||(34298411-34298461)
chr1 (7-81)||(39130802-39130876)
chr1 (6-59)||(1262856-1262909)
chr1 (6-59)||(1486743-1486796)
chr1 (6-42)||(19562655-19562691)
chr1 (6-66)||(38503285-38503345)
chr1 (7-42)||(609493-609528)
chr1 (6-49)||(6415035-6415078)
chr1 (6-81)||(31014993-31015068)
chr1 (6-49)||(46348417-46348460)
chr1 (7-58)||(48450622-48450673)
chr1 (8-42)||(3490426-3490460)
chr1 (6-40)||(10475011-10475045)
chr1 (6-72)||(15641064-15641130)
chr1 (4-42)||(40285686-40285724)
chr1 (6-59)||(20157384-20157437)
chr1 (6-39)||(21530681-21530714)
chr1 (7-36)||(41877505-41877534)
chr1 (6-66)||(10577769-10577829)
chr1 (13-49)||(18556497-18556533)
chr1 (21-81)||(34315663-34315722)
[»] scaffold0223 (1 HSPs)
scaffold0223 (6-81)||(20122-20197)
[»] chr3 (34 HSPs)
chr3 (6-81)||(8383207-8383282)
chr3 (7-66)||(24205076-24205135)
chr3 (15-81)||(8842280-8842346)
chr3 (6-50)||(5407281-5407325)
chr3 (6-66)||(28917966-28918026)
chr3 (7-66)||(4991002-4991061)
chr3 (6-68)||(5441065-5441128)
chr3 (13-72)||(10335327-10335386)
chr3 (6-81)||(55401025-55401100)
chr3 (6-80)||(8587055-8587129)
chr3 (7-57)||(9800014-9800064)
chr3 (6-80)||(32429414-32429488)
chr3 (6-58)||(2620087-2620139)
chr3 (6-66)||(15796328-15796388)
chr3 (6-58)||(26492239-26492291)
chr3 (10-49)||(21720746-21720785)
chr3 (6-81)||(25064859-25064934)
chr3 (7-45)||(8039870-8039908)
chr3 (6-56)||(12674535-12674585)
chr3 (8-82)||(14223889-14223962)
chr3 (8-49)||(3865592-3865633)
chr3 (8-49)||(12703989-12704030)
chr3 (6-66)||(3164059-3164119)
chr3 (6-42)||(4987325-4987361)
chr3 (6-42)||(6525714-6525750)
chr3 (13-49)||(10318075-10318111)
chr3 (8-80)||(14618732-14618804)
chr3 (6-50)||(14832080-14832124)
chr3 (6-42)||(21479107-21479143)
chr3 (7-39)||(25074781-25074813)
chr3 (6-42)||(26290360-26290396)
chr3 (6-58)||(26508083-26508135)
chr3 (6-38)||(34307814-34307846)
chr3 (6-42)||(40052321-40052357)
[»] scaffold0053 (1 HSPs)
scaffold0053 (6-66)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (7-66)||(225303-225362)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-48)||(92790-92831)
[»] scaffold0018 (2 HSPs)
scaffold0018 (6-78)||(178853-178925)
scaffold0018 (7-48)||(192284-192325)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-66)||(241559-241611)
[»] chr4 (18 HSPs)
chr4 (6-66)||(23293020-23293080)
chr4 (7-42)||(35723420-35723455)
chr4 (8-42)||(17345451-17345485)
chr4 (7-64)||(847918-847975)
chr4 (6-59)||(36635296-36635349)
chr4 (7-66)||(24343472-24343531)
chr4 (7-49)||(7012048-7012090)
chr4 (6-87)||(7670625-7670709)
chr4 (6-56)||(20521883-20521933)
chr4 (8-66)||(20633450-20633508)
chr4 (6-40)||(40613441-40613475)
chr4 (8-77)||(28084475-28084544)
chr4 (8-49)||(30298928-30298969)
chr4 (8-49)||(30327796-30327837)
chr4 (6-38)||(1747205-1747237)
chr4 (6-81)||(5775392-5775469)
chr4 (6-49)||(16184801-16184842)
chr4 (13-81)||(28720827-28720894)
[»] scaffold0652 (1 HSPs)
scaffold0652 (6-66)||(496-556)
[»] scaffold0279 (1 HSPs)
scaffold0279 (5-81)||(17903-17979)
[»] scaffold0475 (1 HSPs)
scaffold0475 (7-66)||(3281-3340)
[»] scaffold0103 (1 HSPs)
scaffold0103 (6-49)||(51793-51836)
[»] scaffold0168 (1 HSPs)
scaffold0168 (6-72)||(21002-21068)
[»] scaffold0697 (1 HSPs)
scaffold0697 (6-39)||(1636-1669)
[»] scaffold0027 (1 HSPs)
scaffold0027 (6-58)||(46655-46707)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38816724 - 38816932
Alignment:
Q  1 atagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatggttaccgttcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||||    
T  38816724 atagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaat 38816816  T
Q  101 tattctattttctcaaattattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816817 tattctattttctcaaattattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacctg 38816916  T
Q  201 cagcgactctctgttg 216  Q
    ||||||||||||||||    
T  38816917 cagcgactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 19820428 - 19820503
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  19820428 gattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 22013431 - 22013364
Alignment:
Q  14 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 42469245 - 42469171
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||| | |||||||||||||| |||||||| ||||| ||| |||||| | ||||||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 15410483 - 15410532
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    ||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  15410483 attttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 6326332 - 6326384
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  6326332 attttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 15382500 - 15382442
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  9 tttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||||||||||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 21191090 - 21191143
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||| |||||||||    
T  21191090 gattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 2436939 - 2436878
Alignment:
Q  14 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||||||||||||      ||| ||||||||| |||||||| ||||||||||||    
T  2436939 caaattattagcggtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttcatag 2436878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3966528 - 3966492
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3966528 gattttctcaaattattagcggtgtcggcatgtcagt 3966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 17123073 - 17123037
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||||||||| |||||||||||    
T  17123073 gattttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 21522766 - 21522722
Alignment:
Q  15 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 21533332 - 21533288
Alignment:
Q  15 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 27144488 - 27144452
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||| |||||||||||||||||||||||||||||||    
T  27144488 gatttcctcaaattattagcggtgtcggcgtgtcagt 27144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 6247647 - 6247572
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||  |||||||||||||||| | |||  ||||||||| ||||| || |||| |||||||    
T  6247647 gattttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccgcatccgtgtttcatag 6247572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 14674294 - 14674251
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  14674294 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 14674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 19579726 - 19579683
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||    
T  19579726 gattttctcaaattattagctgtgtcggcgtatcagtgtccgtg 19579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 21137713 - 21137654
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||| ||||||| || ||||||||||||||| ||||||  |||||||| ||||||    
T  21137713 attttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgt 21137654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 34879375 - 34879332
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||    
T  34879375 gattttctcaaatttttagcggtgccggcgtgtccgtatccgtg 34879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 5873548 - 5873590
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  5873548 attttctcaaattattagaggtgtcggcatgtcagtgtccgtg 5873590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 11685966 - 11685928
Alignment:
Q  4 gcgattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  11685966 gcgactttctcaaattattagcggtgtcggcatgtcagt 11685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 27932259 - 27932229
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtg 37  Q
    |||||||||||||||||||||||||||||||    
T  27932259 attttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 28588708 - 28588742
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtca 40  Q
    |||||||||||||||||| ||||||||||||||||    
T  28588708 gattttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 36642803 - 36642849
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  36642803 tcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 36642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 19552577 - 19552626
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 55  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||    
T  19552577 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgt 19552626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 22423846 - 22423895
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 55  Q
    |||||||||||||||||||  ||||| | ||||||||||||||| |||||    
T  22423846 gattttctcaaattattagtagtgtcagggtgtcagtatccgtgtcgtgt 22423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 30135336 - 30135264
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||| ||||||||||||  ||||||||||||| ||||| ||| ||||||| | ||||||||  |||||||||||    
T  30135336 ttttttcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtcc-gtgtccgtatatgtgcttcatag 30135264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 32766975 - 32767004
Alignment:
Q  4 gcgattttctcaaattattagcggtgtcgg 33  Q
    ||||||||||||||||||||||||||||||    
T  32766975 gcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 37328886 - 37328955
Alignment:
Q  14 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagta 83  Q
    ||||||||| || ||||||| || ||||| |||||| ||||| ||| |||||| | ||||||||||||||    
T  37328886 caaattatttgctgtgtcggtgtatcagtgtccgtgtcgtgttcggtgtccgtgtccgtgcttcatagta 37328955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 13287433 - 13287493
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||| | |||||| ||||| ||| |||||| ||||||||| ||||||    
T  13287433 gattttttcaaattattatctgtgtcgacgtgttagtgtccgtgtcgtgtccggtgtccgt 13287493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 31084348 - 31084312
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  31084348 gattttttcaaattattagctgtgtcggcgtgtcagt 31084312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 27945065 - 27944991
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 24105702 - 24105629
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| |||||||| | ||||||| ||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 11722132 - 11722185
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11722132 gattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 1433479 - 1433419
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||||||||||||| |||||||||||||||| | |||||| ||||| ||| ||||||    
T  1433479 gattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 32308145 - 32308109
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  32308145 gattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 2034462 - 2034392
Alignment:
Q  10 ttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||| ||||||| ||||| |||||||||| |||||| | | ||||||| ||||||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttcatag 2034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 2425767 - 2425818
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 57  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2425767 gattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 7328726 - 7328805
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatat 86  Q
    ||||||||||||||||||| || ||| ||||| | | || ||| ||||| ||| |||||||| |||||||||||||||||    
T  7328726 attttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 43027503 - 43027578
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||| | |||| ||||||||| |||||| ||||||| | ||||| || ||||||||||||    
T  43027503 gattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcatag 43027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 43250017 - 43249958
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||||||||| | |||||||||||||||| |||||| | ||||||| ||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 8046061 - 8046103
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  8046061 gattttctcaaattattagtggtgttggcgtgtcagtatccgt 8046103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 19206075 - 19206025
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||||||||||||||||||||||||||||||  || |||||| ||||||    
T  19206075 gattttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtc 19206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 23191921 - 23191879
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    ||||||||||||||||||||||||||||||| ||||| |||||    
T  23191921 gattttctcaaattattagcggtgtcggcgtatcagtgtccgt 23191879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 24339667 - 24339605
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 68  Q
    |||||| ||||||||||||| |||||||||||||| | ||| || ||||||||| ||||||||    
T  24339667 gattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 26733329 - 26733279
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||| |||||||||||||||||||| ||||||||| |||||| ||||||    
T  26733329 gattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 49107844 - 49107795
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 57  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtgtcc 49107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 20549816 - 20549780
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  20549816 gattttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 29787403 - 29787435
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgt 38  Q
    |||||||||||||||||||||||||||||||||    
T  29787403 gattttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 2948708 - 2948669
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatc 45  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  2948708 gattttctaaaattatcagcggtgtcggcgtgtcagtatc 2948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 21828439 - 21828482
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||||| || |||||||||||||||||| ||||||    
T  21828439 gattttctcaaattactaacggtgtcggcgtgtcagtgtccgtg 21828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 22484049 - 22484014
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22484049 attttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 28155594 - 28155563
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgt 38  Q
    ||||||||||||||||||||||||||||||||    
T  28155594 attttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 598233 - 598160
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    |||||||| ||||||||||||||||||  |||||||| |||||| | |||| || ||||||  ||||||||||||    
T  598233 gattttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgt-gtcgtgcttcata 598160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 5236010 - 5235960
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 57  Q
    ||||||| |||||||||||||||||| ||||||||| || ||| |||||||    
T  5236010 attttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 20545270 - 20545312
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    |||||| |||||||||||||||||| |||||||| ||||||||    
T  20545270 gattttttcaaattattagcggtgttggcgtgtccgtatccgt 20545312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 26329418 - 26329476
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||||||||||| || ||||||||||||||| || ||| ||||||| | ||||||    
T  26329418 ttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgt 26329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 4017830 - 4017879
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 57  Q
    |||||||||||||||| | ||||||||||||| || |||||| |||||||    
T  4017830 ttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtcc 4017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 6630949 - 6630982
Alignment:
Q  9 tttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||| |||||||||||||||||    
T  6630949 tttctcaaattattagtggtgtcggcgtgtcagt 6630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 25791675 - 25791642
Alignment:
Q  9 tttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||| |||||||||||||||||||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagt 25791642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 11061110 - 11061162
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||||| ||||||| |||||||| |||||| ||| ||||    
T  11061110 gattttttcaaattattagctgtgtcggtgtgtcagtgtccgtgtcgtatccg 11061162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 17851456 - 17851396
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||| |||||||||||||| |||  ||||| |||||| || ||||||||| ||||||    
T  17851456 gattttctaaaattattagcggtatcgatgtgtcggtatccatgtcgtgtccggtgtccgt 17851396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 22868067 - 22868031
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||| |||||||| |||||||||||||||||    
T  22868067 gattttctcatattattagtggtgtcggcgtgtcagt 22868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 9027203 - 9027143
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  9027203 gattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 853893 - 853968
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  853893 gattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 5000660 - 5000720
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  5000660 gattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||  |||||||||||||||| |||||| |||||| || |||||||| ||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 12696348 - 12696277
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcat 79  Q
    ||||| ||||||||||||| |||||||||||||||| |||||| ||||||| | |||||||| ||||||||||    
T  12696348 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 9629408 - 9629357
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 57  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  9629408 gattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 10294134 - 10294079
Alignment:
Q  4 gcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  10294134 gcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgtccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 30866178 - 30866253
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||||||||||| || ||||| || || ||| | ||||||| |||||||||||| ||||||||    
T  30866178 gattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttcatag 30866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 6389767 - 6389693
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||| | |||||||||||| ||| |||||| ||||||||| ||| || | ||||||||||||    
T  6389767 attttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 9658904 - 9658854
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9658904 gattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 19040377 - 19040339
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtat 44  Q
    |||||||||||||||||||||||||||||||||||||||    
T  19040377 gattttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 3398637 - 3398569
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||  |||||||| | ||||||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 5732544 - 5732604
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||||||||||||| |||||||||||||||||| ||| || ||||||| | ||||||    
T  5732544 gattttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgt 5732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 7938141 - 7938081
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  7938141 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 9107404 - 9107464
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||    
T  9107404 gattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgt 9107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 13851760 - 13851712
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 55  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 16766722 - 16766662
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  16766722 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 16766662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 7977865 - 7977924
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||| ||||||||||||| |||||||||||||||||||| || ||||||| | ||||||    
T  7977865 attttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 20371144 - 20371187
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||||||||||||||||||||||||| | ||||||    
T  20371144 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtg 20371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 426548 - 426601
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  426548 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 7265627 - 7265668
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccg 47  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  7265627 gattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 8777007 - 8777059
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||    
T  8777007 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 34073381 - 34073441
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||||||||||||| ||| ||| ||||||| |||||| ||||||| | ||||||    
T  34073381 gattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagtgtccgt 34073441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 34595159 - 34595099
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||    
T  34595159 gattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 17841623 - 17841666
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  17841623 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 17841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 25038106 - 25038180
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||| |||||||  |||||||||||| ||| ||| | |   |||||||| ||||||||||||    
T  25038106 attttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgtattcaatgtccgtatccgtgcttcatag 25038180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 31959184 - 31959111
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    |||||| ||||||||||||| ||| |||||||||||| | |||| | ||||| | |||||||| |||||||||||    
T  31959184 gattttttcaaattattagctgtgacggcgtgtcagtgttcgtgtcatgtcc-gtgtccgtatccgtgcttcata 31959111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 10842557 - 10842524
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtc 39  Q
    |||||| |||||||||||||||||||||||||||    
T  10842557 gattttttcaaattattagcggtgtcggcgtgtc 10842524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 677862 - 677826
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||| | ||||||||||||||||    
T  677862 gattttctcaaattattaacagtgtcggcgtgtcagt 677826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 4877965 - 4877890
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg--gagtccgtattcgtgcttcatag 81  Q
    |||| ||||||||||||| ||||||| |||||| |||||||| ||||| ||  | ||||||||  |||||||||||    
T  4877965 ttttttcaaattattagctgtgtcggtgtgtcactatccgtgtcgtgttcggcgtgtccgtatctgtgcttcatag 4877890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 7930330 - 7930254
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    |||||| |||||||||||   |||||||| ||||||| ||||| | |||||||| ||| |||| | |||||||||||    
T  7930330 gattttttcaaattattaattgtgtcggcatgtcagtgtccgttctgtgtccggtgtctgtatccatgcttcatagt 7930254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 7996412 - 7996448
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||| |||||||| |||||||    
T  7996412 gattttctcaaattattagcagtgtcggcatgtcagt 7996448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 8022389 - 8022353
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||| |||||||| |||||||    
T  8022389 gattttctcaaattattagcagtgtcggcatgtcagt 8022353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 10339160 - 10339196
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||| | |||||||||||||||||||    
T  10339160 gattttctcaaattaatcgcggtgtcggcgtgtcagt 10339196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 16833333 - 16833281
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||||  |||||||||||||||| || ||| ||||||||    
T  16833333 gattttttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccg 16833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 17341698 - 17341734
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  17341698 gattttatcaaattattaacggtgtcggcgtgtcagt 17341734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 21395342 - 21395374
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtc 39  Q
    |||||||||||||||||||||||| ||||||||    
T  21395342 attttctcaaattattagcggtgttggcgtgtc 21395374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 21424836 - 21424872
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||| |||||||||||||||||| |||||||||||    
T  21424836 gattttttcaaattattagcggtgttggcgtgtcagt 21424872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 13425 - 13349
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  13425 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 21902 - 21978
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    |||||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  21902 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 25192388 - 25192456
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||  |||||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 926822 - 926888
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 72  Q
    |||||||||||||||||||  |||| ||||||||||| |||||| ||||||||| |||||| |||||    
T  926822 gattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 29510338 - 29510396
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 64  Q
    |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  29510338 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 22652001 - 22651948
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||| ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  22652001 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 27213572 - 27213519
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  27213572 gattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 126390 - 126457
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||| |||||||||||||||||  ||||||| | || ||||| ||||||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtcc-gtgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 13436998 - 13437073
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||| |||||||||||||||| ||| || | ||||||| |||| | | ||||||||||||    
T  13436998 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 31109552 - 31109595
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  31109552 gattttctcaaattattaacggtgtcggcgtgtcagtgtccgtg 31109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 24362236 - 24362298
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 68  Q
    |||| ||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||||    
T  24362236 gattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 39954313 - 39954346
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtc 39  Q
    ||||||||||||||||||||||||||||||||||    
T  39954313 gattttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 31236611 - 31236651
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatcc 46  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  31236611 gattttctcaaattattagcagtgtcggcgtgtccgtatcc 31236651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 4298920 - 4298994
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||| | |||||||||||| |||||| ||| ||||||| | |||| ||| ||||||||||||    
T  4298920 gattttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtcc-gtgtccatatccgtgcttcatag 4298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 11944690 - 11944615
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||| | |||||||||||| || ||||||| |||||  || ||||||||  |||||||||||    
T  11944690 gattttatcaaattattaacagtgtcggcgtgttagcatccgtgtcgtgtttggtgtccgtatctgtgcttcatag 11944615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 4673459 - 4673521
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 68  Q
    |||||| ||||||||||| | |||||||||||||||| || ||| ||||||||  ||||||||    
T  4673459 gattttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtat 4673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 27101540 - 27101506
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtca 40  Q
    |||||| ||||||||||||||||||||||||||||    
T  27101540 gattttttcaaattattagcggtgtcggcgtgtca 27101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 34897110 - 34897068
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    ||||||||||||||||||||||||||| |||||| || |||||    
T  34897110 gattttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 13844630 - 13844663
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtc 39  Q
    |||||||||||||||||||| |||||||||||||    
T  13844630 gattttctcaaattattagcagtgtcggcgtgtc 13844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 2572090 - 2572150
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||  |||||| |||||| ||||||||| ||||||| | ||||||    
T  2572090 gattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgt 2572150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 20873094 - 20873042
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||| |  ||||||||||||||| |||||| ||||||||    
T  20873094 gattttttcaaattattatctatgtcggcgtgtcagtgtccgtgtcgtgtccg 20873042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  17 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 20539708 - 20539783
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||| |||||| ||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  20539708 gattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 21782852 - 21782927
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||||| |||||||||||||||| |  ||| ||||||| | ||| |||||||||||||||||    
T  21782852 gattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtattcgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 21616787 - 21616737
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  21616787 gattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 19536434 - 19536507
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 23718048 - 23717976
Alignment:
Q  9 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||| | ||| |||| |||||||||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 23717976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 24105720 - 24105648
Alignment:
Q  9 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||| | ||| |||| |||||||||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 24105648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 21624282 - 21624217
Alignment:
Q  15 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    ||||||||||| |||||||||||||||| || ||| ||||| ||| |||||||| || ||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 4332951 - 4332891
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||| |||||||||| | |||||||| ||| |||||| ||||||||||||| ||||||    
T  4332951 gattttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccggtgtccgt 4332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 18276546 - 18276486
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||||||||||||||||||||| | ||||| || ||  ||||||||| ||||||    
T  18276546 gattttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 37411278 - 37411313
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcag 41  Q
    ||||||||||||||||||||||||||||| ||||||    
T  37411278 gattttctcaaattattagcggtgtcggcatgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 38117193 - 38117261
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    |||||| ||||||||||||| ||||||||||||||      ||| ||||||||| |||||||| |||||||||||    
T  38117193 gattttttcaaattattagctgtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttcata 38117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 14996260 - 14996333
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    |||| ||||||||||||| |||||||| ||||||| |||||| | ||| | | |||||||| |||||||||||||    
T  14996260 ttttttcaaattattagctgtgtcggcttgtcagtgtccgtgtcatgt-ctgcgtccgtatccgtgcttcatagt 14996333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 18420468 - 18420506
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtat 44  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  18420468 gattttctcaaattattagcagtgttggcgtgtcagtat 18420506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 21374734 - 21374810
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg--ccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    ||||| ||||||||||||| |||||||||||| ||| ||||||  | |||||| | |||||||| |||||||||||||    
T  21374734 attttttcaaattattagctgtgtcggcgtgttagtgtccgtgtccggtgtcc-gtgtccgtatccgtgcttcatagt 21374810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 31018615 - 31018557
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 64  Q
    |||||||| |||||||||||||||| ||||||||||| ||| || ||| ||||| ||||    
T  31018615 gattttctgaaattattagcggtgttggcgtgtcagtgtccatgtcgtatccggtgtcc 31018557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 36409661 - 36409711
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||| ||||||||| |||||||||||| ||| |||||||||| ||||||    
T  36409661 gattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 4142875 - 4142936
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 68  Q
    ||||||| ||||| |||| ||||||||||||||||| |||| | ||||| ||| ||||||||    
T  4142875 attttcttaaattgttagtggtgtcggcgtgtcagtgtccgggtcgtgttcggtgtccgtat 4142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 21091747 - 21091706
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  21091747 attttcttaaattattagcggtgtcggtgtgtcagtgtccgt 21091706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 896236 - 896200
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  896236 gattttctcaaactattagcagtgtcggcgtgtcagt 896200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 10535794 - 10535842
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 55  Q
    ||||||||||||||||| |||||||||||| | |||||| ||| |||||    
T  10535794 attttctcaaattattatcggtgtcggcgtattagtatctgtgtcgtgt 10535842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 30404884 - 30404936
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||| | |||||||||||||||| |||||| | ||||||    
T  30404884 gattttttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccg 30404936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 31284073 - 31284041
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgt 38  Q
    |||||||||||||||||||| ||||||||||||    
T  31284073 gattttctcaaattattagcagtgtcggcgtgt 31284041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 42832311 - 42832343
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtc 39  Q
    ||||||||||||||||||||||||||| |||||    
T  42832311 attttctcaaattattagcggtgtcggtgtgtc 42832343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 6427375 - 6427323
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6427375 gattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 40917776 - 40917716
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  40917776 gattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 398799 - 398858
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccg 65  Q
    |||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  398799 gattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 2896155 - 2896207
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  2896155 gattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 5376535 - 5376609
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    ||||||| |||||||||||||||||||||||| ||| |||||| |||||||||| || |||| ||||| |||||||    
T  5376535 attttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga-tctgtatacgtgcctcatagt 5376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 5927374 - 5927449
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||| ||||  |||||||||| |||||| ||||||||| |||||||| ||||||| ||||    
T  5927374 gattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 10572623 - 10572690
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtg 73  Q
    ||||||||||||||||||| ||||||||||||||||| | | || ||||||||| |||||||| ||||    
T  10572623 gattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 12443494 - 12443538
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 50  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  12443494 gattttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 17831565 - 17831601
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  17831565 gattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 36878486 - 36878450
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||||||||||||||||||||    
T  36878486 gattttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 68  Q
    ||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 9709845 - 9709795
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9709845 gattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 34298461 - 34298411
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    ||||||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  34298461 gattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 39130802 - 39130876
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||| |||||||||   ||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||    
T  39130802 attttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 1262909 - 1262856
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||||||||||||||||| ||||||||||||| || | |||| |||||||||    
T  1262909 gattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccgg 1262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 1486743 - 1486796
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  1486743 gattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 19562655 - 19562691
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19562655 gattttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 38503345 - 38503285
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||||||||||||||||||||||| |||| ||| |||||| | ||||| | ||||||    
T  38503345 gattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtcatgtcccgtgtccgt 38503285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 609493 - 609528
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||| |||||||||||||||||    
T  609493 attttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 6415035 - 6415078
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||    
T  6415035 gattttctcaaataattagcgatgtcggcgtgtcagtgtccgtg 6415078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 31015068 - 31014993
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||||| |||| |||| ||||||  ||||| |||| |||| ||| || | ||||||||||||    
T  31015068 gattttctcaaattattagctgtgtaggcgcgtcagtgcccgtgtcgtgcccggtgtctgtgtccgtgcttcatag 31014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 46348417 - 46348460
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  46348417 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 46348460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 48450622 - 48450673
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    ||||| ||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  48450622 attttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 3490426 - 3490460
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||| ||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagt 3490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 10475011 - 10475045
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtca 40  Q
    ||||||||||| |||||||||||||||||||||||    
T  10475011 gattttctcaagttattagcggtgtcggcgtgtca 10475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 15641064 - 15641130
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 72  Q
    |||||||| ||||||||||| |||||||| ||||||| |||||| | ||||||  |||||| |||||    
T  15641064 gattttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtgttcgt 15641130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 40285686 - 40285724
Alignment:
Q  4 gcgattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  40285686 gcgattttctcaaattattagcggtgttggtgtgtcagt 40285724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 20157384 - 20157437
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    |||||||||| ||||||||||||||||  ||||||||  ||||| |||||||||    
T  20157384 gattttctcacattattagcggtgtcgatgtgtcagtgcccgtgtcgtgtccgg 20157437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 21530714 - 21530681
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtc 39  Q
    |||||||||||||||||| |||||||||||||||    
T  21530714 gattttctcaaattattaacggtgtcggcgtgtc 21530681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 41877505 - 41877534
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgt 36  Q
    ||||||||||||||||||||||||||||||    
T  41877505 attttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 10577769 - 10577829
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||| |||  |||||| ||||||||||||| || |||||| ||||||||| ||||||    
T  10577769 gattttctaaaaaaattagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgt 10577829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 18556497 - 18556533
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  18556497 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 18556533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 34315722 - 34315663
Alignment:
Q  21 ttagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||| |||||||| |||||||||||||| |||||||  | ||||||| ||||||||||||    
T  34315722 ttagctgtgtcggcatgtcagtatccgtgtcgtgtccata-tccgtatccgtgcttcatag 34315663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 20197 - 20122
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  20197 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 8383282 - 8383207
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||||| | |||||| | |||||| |||||    
T  8383282 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgctacatag 8383207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 24205076 - 24205135
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 8842346 - 8842280
Alignment:
Q  15 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||||| |||||||| ||||||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 5407281 - 5407325
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 50  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  5407281 gattttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 28918026 - 28917966
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||| ||||||    
T  28918026 gattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 4991002 - 4991061
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||| ||||||||||||||| |||||||| |||||| ||||| ||| ||||||    
T  4991002 attttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgt 4991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 5441065 - 5441128
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga-gtccgtat 68  Q
    |||||||||||||| ||||||||| |||||||||||| || ||| |||||||||| ||||||||    
T  5441065 gattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccggatgtccgtat 5441128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 72  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 55401100 - 55401025
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| ||||||||||||  |||||||||| ||||| |||||| ||| ||||| ||||||||  |||||||||||    
T  55401100 gattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 8587055 - 8587129
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    |||||| |||||||| |||  |||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||    
T  8587055 gattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 9800064 - 9800014
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 57  Q
    |||||||||||||||||| ||||||||||||||||| | |||| |||||||    
T  9800064 attttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgtgtcc 9800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 32429414 - 32429488
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    |||||||| |||||||||||| |||||| |||||| | | ||||  |||||||| |||||||| |||||||||||    
T  32429414 gattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttcata 32429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 2620087 - 2620139
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| | ||||||||    
T  2620087 gattttctcaaatgattagtggtgtcggcgtgtcagtgtccgagtcgtgtccg 2620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 15796328 - 15796388
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| ||||||||| ||||||    
T  15796328 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 26492239 - 26492291
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  26492239 gattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 21720785 - 21720746
Alignment:
Q  10 ttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagtgtccgtg 21720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 25064934 - 25064859
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||| |||||| ||||||||||||||||||||| | || ||| ||||||||| ||| |||  |||| |||||||    
T  25064934 gattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtccggtgtctgtacccgtgtttcatag 25064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 8039870 - 8039908
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatc 45  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  8039870 attttctcaaattattagcggtgttggcgtgtcaatatc 8039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 12674535 - 12674585
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||||||||||||||||| ||||||| |||||| | |||||| ||||||    
T  12674535 gattttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtc 12674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 14223889 - 14223962
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 82  Q
    |||||||||||||||| | ||||||||||||| || || ||| ||||||| | ||| || |||||||||||||||    
T  14223889 ttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtcc-gtgtctgtgttcgtgcttcatagt 14223962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 3865592 - 3865633
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  3865592 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 3865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 12704030 - 12703989
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  12704030 ttttctcaaattattagtggtgtcggcgtgtccatatccgtg 12703989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 3164059 - 3164119
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||| |||| || | |||||| ||||||||| ||||||    
T  3164059 gattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgt 3164119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4987325 - 4987361
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  4987325 gattttttcaaattattagctgtgtcggcgtgtcagt 4987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 6525714 - 6525750
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||||||||||| | |||||||    
T  6525714 gattttctcaaattattagcggtgtcgacatgtcagt 6525750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10318075 - 10318111
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  10318075 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 10318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 14618804 - 14618732
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 80  Q
    |||||| |||||||||| |||||| |||| |||||  ||||| |||||| || |||||||  |||||||||||    
T  14618804 ttttcttaaattattaggggtgtcagcgtctcagtgcccgtgtcgtgtctggtgtccgtacccgtgcttcata 14618732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 14832124 - 14832080
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 50  Q
    |||||| ||||||||||||| || |||||||||| ||||||||||    
T  14832124 gattttttcaaattattagctgtatcggcgtgtccgtatccgtgc 14832080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 21479143 - 21479107
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  21479143 gattttttcaaattattagctgtgtcggcgtgtcagt 21479107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 25074813 - 25074781
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtc 39  Q
    ||||||||||||||||| |||||||||||||||    
T  25074813 attttctcaaattattatcggtgtcggcgtgtc 25074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26290396 - 26290360
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||  |||||||||||||||||    
T  26290396 gattttctcaaattattaatggtgtcggcgtgtcagt 26290360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 26508135 - 26508083
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||||| ||||| ||||||||||||| ||  ||||||||    
T  26508135 gattttttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccg 26508083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 34307814 - 34307846
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgt 38  Q
    |||||||||||||||||||||||||| ||||||    
T  34307814 gattttctcaaattattagcggtgtcagcgtgt 34307846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 40052357 - 40052321
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  40052357 gattttttcaaattattagctgtgtcggcgtgtcagt 40052321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 8823 - 8763
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  8823 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 225303 - 225362
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 92831 - 92790
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  92831 attttctcaaattattagcggtgtcggcgtgtcagtgtccgt 92790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 178853 - 178925
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 78  Q
    |||||| ||||||||||||  |||||||||||||||| |||||| ||||||||| |||  ||| |||||||||    
T  178853 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcaatatccgtgcttca 178925  T

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Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 192284 - 192325
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgt 48  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  192284 attttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 241611 - 241559
Alignment:
Q  14 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  241611 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 241559  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 23293020 - 23293080
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 23293080  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 35723420 - 35723455
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  35723420 attttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagt 42  Q
    |||||||||||||||||||||||||||||||||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 847975 - 847918
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 64  Q
    |||||||||||||||||||||  ||||||||||||| || ||| ||||||||| ||||    
T  847975 attttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtcc 847918  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 36635349 - 36635296
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 59  Q
    ||||||||||||||||||| ||||| ||||||||||| |||| | |||||||||    
T  36635349 gattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 24343531 - 24343472
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||||||||||||| | ||||||||||||| |  |||||| ||||||||| ||||||    
T  24343531 attttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgt 24343472  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 7012090 - 7012048
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    ||||||||||||||||| ||||||||||||||| || ||||||    
T  7012090 attttctcaaattattatcggtgtcggcgtgtcggtgtccgtg 7012048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 87
Target Start/End: Complemental strand, 7670709 - 7670625
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcg---tgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatg 87  Q
    |||||||||||| |||||||  ||||||||   ||||||| |||| | |||||||||  ||| ||||||||||||||| ||||||    
T  7670709 gattttctcaaactattagcaatgtcggcgacgtgtcagtttccgcgtcgtgtccggtatccatattcgtgcttcatactatatg 7670625  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 20521883 - 20521933
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 56  Q
    |||||| ||||||||||| |||| ||||||||||||| |||||| ||||||    
T  20521883 gattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtc 20521933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 20633508 - 20633450
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||| |||||||||||||||||||| ||||||||| |||||  |||||| || ||||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgt 20633450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 40613475 - 40613441
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtca 40  Q
    |||||||||||| ||||||||||||||||||||||    
T  40613475 gattttctcaaaatattagcggtgtcggcgtgtca 40613441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 28084544 - 28084475
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttc 77  Q
    |||| ||||||| ||||| |||||||||||||||  || ||| ||||||||| ||||||||  |||||||    
T  28084544 ttttttcaaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgtatctgtgcttc 28084475  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 30298969 - 30298928
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  30298969 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 30298928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 30327837 - 30327796
Alignment:
Q  8 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  30327837 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 30327796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 1747237 - 1747205
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgt 38  Q
    ||||||||||| |||||||||||||||||||||    
T  1747237 gattttctcaatttattagcggtgtcggcgtgt 1747205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 5775392 - 5775469
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagta---tccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||||||||  |||||||  |||||||||   |||||| ||||||| | |||| ||||||||||||||||    
T  5775392 gattttctcaaattattaatggtgtcgt-gtgtcagtagtgtccgtgtcgtgtcctgtgtccatattcgtgcttcatag 5775469  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 16184842 - 16184801
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||||||||||||||||||  |||||||||||||| ||||||    
T  16184842 gattttctcaaattattagcg--gtcggcgtgtcagtgtccgtg 16184801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 28720894 - 28720827
Alignment:
Q  13 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    ||||||||||||| |||||||| ||||||| | |||| ||||||| | ||| |||| ||||||||||||    
T  28720894 tcaaattattagctgtgtcggcatgtcagtgttcgtgtcgtgtcc-gtgtctgtatacgtgcttcatag 28720827  T

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Target: scaffold0652 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 496 - 556
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    |||||| ||||||||||||| |||||||||| ||||| |||||| ||||| ||| ||||||    
T  496 gattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgt 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 17903 - 17979
Alignment:
Q  5 cgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 81  Q
    |||||||||||||||||||||||||| |||||||  || |  ||  ||||||| | |||||||| ||||||||||||    
T  17903 cgattttctcaaattattagcggtgtaggcgtgttggtgtttgtatcgtgtccagtgtccgtatccgtgcttcatag 17979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 3340 - 3281
Alignment:
Q  7 attttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 66  Q
    ||||||| ||||| |||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  3340 attttctaaaattgttagcattgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgt 3281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 51836 - 51793
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtg 49  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||    
T  51836 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 51793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 21068 - 21002
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 72  Q
    |||||||||||||||||| | ||||| || ||||||| |||||| |||||| || |||||| |||||    
T  21068 gattttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgt 21002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 1669 - 1636
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtc 39  Q
    |||||||||||||||||| |||||||||||||||    
T  1669 gattttctcaaattattaacggtgtcggcgtgtc 1636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 46707 - 46655
Alignment:
Q  6 gattttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 58  Q
    |||||| ||||||||||| | |||||||||||||| | |||||| ||||||||    
T  46707 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccg 46655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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