View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_28 (Length: 227)
Name: NF0445_1D_low_28
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 30276359 - 30276470
Alignment:
| Q |
21 |
agaataattgcctgcgtgaaagctcaaggacacgaaccctcttagctctagtaggatcagagcaaccaagcacagcaagaataccacacattgtagtata |
120 |
Q |
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| T |
30276359 |
agaataattgcctgcgtgaaagctcaaggacacgaaccctcttagctctagtaggatcagagcaaccaagcacagcaagaataccacacattgtagtata |
30276458 |
T |
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| Q |
121 |
tgtttatatgat |
132 |
Q |
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|||||||||||| |
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| T |
30276459 |
tgtttatatgat |
30276470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 25968511 - 25968604
Alignment:
| Q |
21 |
agaataattgcctgcgtgaaagctcaaggacacgaaccctcttagctctagtaggatcagagcaaccaagcacagcaagaataccacacattgt |
114 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |
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| T |
25968511 |
agaataattgcctgcgagaaagctcaaggatgcgaaccctcttagcttgtgagtcatcagagcaaccaagtacagcaagtataccacacattgt |
25968604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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