View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0445_1D_low_30 (Length: 221)
Name: NF0445_1D_low_30
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 23333642 - 23333847
Alignment:
| Q |
1 |
tcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23333642 |
tcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatat |
23333741 |
T |
|
| Q |
101 |
caaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23333742 |
caaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgtt |
23333841 |
T |
|
| Q |
201 |
atgtcc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
23333842 |
atgtcc |
23333847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 181 times since January 2019
Visitors: 3272