View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_33 (Length: 214)
Name: NF0445_1D_low_33
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_33 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 35072156 - 35071949
Alignment:
| Q |
7 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
106 |
Q |
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| T |
35072156 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
35072057 |
T |
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| Q |
107 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttcca |
206 |
Q |
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| T |
35072056 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttcca |
35071957 |
T |
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| Q |
207 |
gctaactg |
214 |
Q |
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|||||||| |
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| T |
35071956 |
gctaactg |
35071949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 35072996 - 35072805
Alignment:
| Q |
7 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
106 |
Q |
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| T |
35072996 |
attggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttca |
35072897 |
T |
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| Q |
107 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
198 |
Q |
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| T |
35072896 |
gataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 35106864 - 35107055
Alignment:
| Q |
7 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
106 |
Q |
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| T |
35106864 |
attggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttca |
35106963 |
T |
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| Q |
107 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
198 |
Q |
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| T |
35106964 |
gataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35107055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 24041052 - 24040861
Alignment:
| Q |
7 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
106 |
Q |
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| T |
24041052 |
attggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttca |
24040953 |
T |
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| Q |
107 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
198 |
Q |
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| T |
24040952 |
gataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
24040861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 24014495 - 24014379
Alignment:
| Q |
7 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
106 |
Q |
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| T |
24014495 |
attggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttca |
24014396 |
T |
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| Q |
107 |
gataacaggagagagga |
123 |
Q |
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| T |
24014395 |
gataagcggagagagga |
24014379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 3123082 - 3123163
Alignment:
| Q |
12 |
aaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatg |
93 |
Q |
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| T |
3123082 |
aaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatg |
3123163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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