View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_4 (Length: 428)
Name: NF0445_1D_low_4
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 24 - 415
Target Start/End: Original strand, 47418753 - 47419144
Alignment:
| Q |
24 |
ccatgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47418753 |
ccatgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgtattacacccaagtgatttagac |
47418852 |
T |
|
| Q |
124 |
caatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggtt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47418853 |
caatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggct |
47418952 |
T |
|
| Q |
224 |
gtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttct |
323 |
Q |
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| T |
47418953 |
gtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaatggtggatctttcagtttct |
47419052 |
T |
|
| Q |
324 |
tgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
415 |
Q |
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| T |
47419053 |
tgactaatagcaatagaactggatgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
47419144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 46 - 415
Target Start/End: Original strand, 47390415 - 47390784
Alignment:
| Q |
46 |
cagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattct |
145 |
Q |
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|||| |||||||||| |||| |||||| ||||| ||| ||||| | |||||| |||||| |||| |||||||||||||||||| || ||| ||||||| |
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| T |
47390415 |
cagtcgacacagatccacctggcattctcttaggatcattgaaagaactctgacgttctgcacctaagtgatttagaccaatgctcggatgtggaatttg |
47390514 |
T |
|
| Q |
146 |
ccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttcca |
245 |
Q |
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|||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||| |||| |
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| T |
47390515 |
ccttatgtgtgaatcatgaggatgaggttgtggtctgaaagatgatgatgaactagtggttgtcccggaaaaatggctgtagttaccaccactgcctcca |
47390614 |
T |
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| Q |
246 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactgg |
345 |
Q |
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| T |
47390615 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactgg |
47390714 |
T |
|
| Q |
346 |
atgttggtaattgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
415 |
Q |
| |
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| T |
47390715 |
atgttggtaattgatttgattgcactactcgaacatcatgttcctgaggttttttagcactgatgtccat |
47390784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 57 - 415
Target Start/End: Original strand, 47407540 - 47407898
Alignment:
| Q |
57 |
gatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgta |
156 |
Q |
| |
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|||| ||||||||||| ||||| ||| |||||| ||||||| ||||||||||||||||||| ||||||||| || ||| ||||||||||||| ||||| |
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| T |
47407540 |
gatccacctcgcattctcttaggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
47407639 |
T |
|
| Q |
157 |
aatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgg |
256 |
Q |
| |
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||| || | ||| |||||||||| |||||||||||||||||||| ||| |||| ||||| | || |||| ||||||||| || |||||| |||||| |
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| T |
47407640 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcgatgg |
47407739 |
T |
|
| Q |
257 |
gaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaat |
356 |
Q |
| |
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||||||||||| ||||||||||| |||| || |||||| ||||||| | || ||||||||||||||| ||| | ||||||| |||| ||||| |
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| T |
47407740 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgacaaatggtgttagaactagatggcagtaat |
47407839 |
T |
|
| Q |
357 |
tgatttgattgcacgactcgaacatcatgttcctgaggttttttagcactgatgtccat |
415 |
Q |
| |
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||| ||| || ||| || |||||||||||||||||| |||||||| ||| |||||||| |
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| T |
47407840 |
tgagttggttccactgcttgaacatcatgttcctgagattttttagtactaatgtccat |
47407898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 174 - 415
Target Start/End: Original strand, 47421362 - 47421603
Alignment:
| Q |
174 |
tgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgtt |
273 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||| |||| |||| | ||||||| || |||||| | |||||||||| ||||| |||| |
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| T |
47421362 |
tgtggtctgagagatgataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgtt |
47421461 |
T |
|
| Q |
274 |
gttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactaatagcaatagaactggatgttggtaattgatttgattgcacgac |
373 |
Q |
| |
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||||||| |||| || |||||| || ||| | || ||||||||||||||||||| | |||||||||||| | |||||||| ||| || ||| || |
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| T |
47421462 |
gttgctgattataaaagccttgtgtgcaaactggggtgttttcagtttcttgactaatggtgttagaactggatggtagtaattgagttggttccactac |
47421561 |
T |
|
| Q |
374 |
tcgaacatcatgttcctgaggttttttagcactgatgtccat |
415 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47421562 |
tcgaacatcatgttcctgagattttttagcactgatgtccat |
47421603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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