View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_1D_low_8 (Length: 373)
Name: NF0445_1D_low_8
Description: NF0445_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_1D_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 14211771 - 14211436
Alignment:
| Q |
15 |
atgcacttcatcacaaagttgttacaagagtaataagcaagaagaatcacttcttatgacacctcatgcagcatcattgatgatcattgaagaacttgta |
114 |
Q |
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| T |
14211771 |
atgcacttcatcacaaagttgttacaagagtaataagcaagaagaatcacttcttatgacacctcatgcagcatcgttgatgatcattgaagaacttgta |
14211672 |
T |
|
| Q |
115 |
acttcatttgactatgctacaaataacatgcatttggaagtaatcagttcccctcatgttctcagtggacttatagaagttgcaagaaatcataatcttg |
214 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14211671 |
acttcaattgactatgctacaaataacatgcatttggaagtaatcagttcccctcatgttctcagtggacttatagaagttgcaagaaatcataatcttg |
14211572 |
T |
|
| Q |
215 |
atgagtttttgtctttgactaccattcttataaaatgcatgcagtttgattcacagtgtagaaagtatgtgtcacagttcactcctcttgctccatttct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14211571 |
atgagtttttgtctttgactaccattcttataaaatgcatgcagtttgattcacagtgtagaaagtatgtgtcacagttcactcctcttgctccatttct |
14211472 |
T |
|
| Q |
315 |
acaccttctagagacggaaaatgttcatgccaaatg |
350 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14211471 |
acaccttctagagacggaaaatgttcatgccaaatg |
14211436 |
T |
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