View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0445_2D_low_3 (Length: 334)

Name: NF0445_2D_low_3
Description: NF0445_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0445_2D_low_3
NF0445_2D_low_3
[»] chr7 (2 HSPs)
chr7 (120-334)||(44871174-44871388)
chr7 (15-115)||(44871105-44871205)
[»] chr3 (8 HSPs)
chr3 (84-330)||(47522895-47523150)
chr3 (15-133)||(47523227-47523345)
chr3 (165-319)||(47528416-47528570)
chr3 (15-112)||(47528596-47528693)
chr3 (82-128)||(47523196-47523242)
chr3 (183-257)||(47550157-47550231)
chr3 (15-64)||(47550362-47550411)
chr3 (84-128)||(47523142-47523186)
[»] chr5 (5 HSPs)
chr5 (165-330)||(9820411-9820576)
chr5 (165-330)||(9853404-9853569)
chr5 (18-113)||(9820225-9820320)
chr5 (18-113)||(9853660-9853755)
chr5 (170-327)||(20683147-20683304)
[»] chr6 (1 HSPs)
chr6 (15-259)||(21081169-21081419)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 120 - 334
Target Start/End: Original strand, 44871174 - 44871388
Alignment:
Q  120 tcagaatttgcttccccaatacaatgactccccttttgatcacgcgcttccctttgacatttaaacaatgaccttccgtcttccaacaagatactaatgg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44871174 tcagaatttgcttccccaatacaatgactccccttttgatcacgcgcttccctttgacatttaaacaatgaccttccgtcttccaacaagatactaatgg 44871273  T
Q  220 atggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44871274 atggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccc 44871373  T
Q  320 tcttttgacaatatt 334  Q
    |||||||||||||||    
T  44871374 tcttttgacaatatt 44871388  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 44871105 - 44871205
Alignment:
Q  15 ggacatcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttccttcggcaacacaatgattcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||| |||    
T  44871105 ggacatcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttgcttccccaatacaatgactcc 44871204  T
Q  115 c 115  Q
    |    
T  44871205 c 44871205  T

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Target: chr3 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 84 - 330
Target Start/End: Complemental strand, 47523150 - 47522895
Alignment:
Q  84 tcagaatttccttcggcaacacaatgattccctgcatcagaatttgcttccccaatacaatgactccccttttgatcacgcg---------cttcccttt 174  Q
    |||||||||  || ||||||||||||||||||||| ||||||||||||||  ||||||||||| ||| ||||| |||||| |         |||||||||    
T  47523150 tcagaatttaattgggcaacacaatgattccctgcttcagaatttgcttcagcaatacaatgattccgcttttcatcacgtgaactaagagcttcccttt 47523051  T
Q  175 gacatttaaacaatgaccttccgtcttccaacaagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaatt 274  Q
    |||| |  ||||| |||||||| ||| |||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||  |||||||    
T  47523050 gacagtccaacaacgaccttccatctcccaacaagatactagtggttggtctatgtcttgtacaaccagcatgagcctcaaatccagtgacattgaaatt 47522951  T
Q  275 aacacgacaacagttacaaactataccatcagaaaatatactccctcttttgacaa 330  Q
    |||||||||||| | ||||||||| ||||||||||||| || ||||||||||||||    
T  47522950 aacacgacaacaatcacaaactatgccatcagaaaataaaccccctcttttgacaa 47522895  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 15 - 133
Target Start/End: Complemental strand, 47523345 - 47523227
Alignment:
Q  15 ggacatcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttccttcggcaacacaatgattcc 114  Q
    |||||| ||||||| ||||||| ||||||||| ||  ||||||||||||||||| | ||||||||||||||| ||||| ||| ||||||||| |||||||    
T  47523345 ggacattgatcacacagtactatgtcacctcccaaatcacaaatagaacaaacagtatcgttatttgcttcataatttgctttggcaacacagtgattcc 47523246  T
Q  115 ctgcatcagaatttgcttc 133  Q
    || | ||||||||| ||||    
T  47523245 ctacttcagaatttccttc 47523227  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 319
Target Start/End: Complemental strand, 47528570 - 47528416
Alignment:
Q  165 gcttccctttgacatttaaacaatgaccttccgtcttccaacaagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactga 264  Q
    ||||||||||||||||  ||||| |||||||| |||||||| ||||||| | |||||| | |  |||||||||||||||||||| ||| |||||||  ||    
T  47528570 gcttccctttgacattccaacaacgaccttccatcttccaagaagataccagtggatgatgtaggtcttgtacaaccagcatgatccttaaatccagcga 47528471  T
Q  265 cggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccc 319  Q
      ||||||||||||  |||||| | |||||| ||||||||| || ||||||||||    
T  47528470 gagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactccc 47528416  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 47528693 - 47528596
Alignment:
Q  15 ggacatcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttccttcggcaacacaatgatt 112  Q
    |||||||||||||||||||||| ||||| |||||| |||||||||||||||||| | || |||||||||||| | ||| ||||||||| |||||||||    
T  47528693 ggacatcgatcacatagtactatgtcacgtccaaaaccacaaatagaacaaacagtatcattatttgcttcatagtttgcttcggcaatacaatgatt 47528596  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 47523242 - 47523196
Alignment:
Q  82 cttcagaatttccttcggcaacacaatgattccctgcatcagaattt 128  Q
    ||||||||||||||||||| |||||||||||||| || |||||||||    
T  47523242 cttcagaatttccttcggcgacacaatgattccccgcttcagaattt 47523196  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 47550231 - 47550157
Alignment:
Q  183 aacaatgaccttccgtcttccaacaagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaat 257  Q
    ||||||||  ||| ||||| ||| ||||||||  ||||||||||  || ||||||||| ||||||||||||||||    
T  47550231 aacaatgaagttctgtcttgcaagaagatacttttggatggtctaggttttgtacaacaagcatgagcctcaaat 47550157  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 47550411 - 47550362
Alignment:
Q  15 ggacatcgatcacatagtactaagtcacctccaaagccacaaatagaaca 64  Q
    ||||||| |||||||| || ||||||||||||||| ||||||| ||||||    
T  47550411 ggacatccatcacataatattaagtcacctccaaaaccacaaacagaaca 47550362  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 47523186 - 47523142
Alignment:
Q  84 tcagaatttccttcggcaacacaatgattccctgcatcagaattt 128  Q
    |||||||||||||| |||||| |||||||||| || |||||||||    
T  47523186 tcagaatttccttcagcaacataatgattccccgcgtcagaattt 47523142  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 330
Target Start/End: Original strand, 9820411 - 9820576
Alignment:
Q  165 gcttccctttgacatttaaacaatgaccttccgtcttccaacaagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactga 264  Q
    |||||||||||||| |  ||||| || ||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| || ||  |||    
T  9820411 gcttccctttgacaatccaacaacgatcttccatcttccaacaagatactagtggatggtctatgtcttgtacaaccagcatgagactcgaacccggtga 9820510  T
Q  265 cggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccctcttttgacaa 330  Q
      || ||  ||||| ||||||| | |||||||||| |||||||||| | ||| |||||||||||||    
T  9820511 tagtaaaggtaacatgacaacaatcacaaactatagcatcagaaaacaaacttcctcttttgacaa 9820576  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 165 - 330
Target Start/End: Complemental strand, 9853569 - 9853404
Alignment:
Q  165 gcttccctttgacatttaaacaatgaccttccgtcttccaacaagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactga 264  Q
    |||||||||||||| |  ||||| || ||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||| || ||  |||    
T  9853569 gcttccctttgacaatccaacaacgatcttccatcttccaacaagatactagtggatggtctatgtcttgtacaaccagcatgagactcgaacccggtga 9853470  T
Q  265 cggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccctcttttgacaa 330  Q
      || ||  ||||| ||||||| | |||||||||| |||||||||| | ||| |||||||||||||    
T  9853469 tagtaaaggtaacatgacaacaatcacaaactatagcatcagaaaacaaacttcctcttttgacaa 9853404  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 9820225 - 9820320
Alignment:
Q  18 catcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttccttcggcaacacaatgattc 113  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||| ||| | ||||||||||||||    
T  9820225 catcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattatttgcttcagatttttctttgacaacacaatgattc 9820320  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 9853755 - 9853660
Alignment:
Q  18 catcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttccttcggcaacacaatgattc 113  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||| || || ||||||||||||||| ||| | ||||||||||||||    
T  9853755 catcgatcacatagtgctaagtcacctccaaaaccacaaatagaacaaacattatcattctttgcttcagaattttctttgacaacacaatgattc 9853660  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 327
Target Start/End: Original strand, 20683147 - 20683304
Alignment:
Q  170 cctttgacatttaaacaatgaccttccgtcttccaacaagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtg 269  Q
    ||||||| | || ||||||||  || |||| ||||| ||||||||  |||||||||| ||||||||||||  ||||||||| || |||    |||  |||    
T  20683147 cctttgatagttcaacaatgaagtttcgtcctccaagaagatacttttggatggtctatgtcttgtacaagaagcatgagcatcgaatatggtgagagtg 20683246  T
Q  270 aaattaacacgacaacagttacaaactataccatcagaaaatatactccctcttttga 327  Q
    || |||||| ||||||| | |||| ||||||  |||||| ||||||| ||||||||||    
T  20683247 aatttaacatgacaacaatcacaagctatacattcagaagatatacttcctcttttga 20683304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 21081419 - 21081169
Alignment:
Q  15 ggacatcgatcacatagtactaagtcacctccaaagccacaaatagaacaaacattgtcgttatttgcttcagaatttccttcggcaacacaatgattcc 114  Q
    |||||||||||||||| || |  |||||| ||||| |||||||||||||||| ||  |   ||||| | | ||||||| || || |||||||||||||||    
T  21081419 ggacatcgatcacataatattgtgtcacccccaaaaccacaaatagaacaaatataat---tattttcattagaatttgctacgacaacacaatgattcc 21081323  T
Q  115 ctgcatcagaatttgcttccccaatacaatgactccccttttgatcacgc---------gcttccctttgacatttaaacaatgaccttccgtcttccaa 205  Q
    || | | ||||||| ||||  ||| ||||||| ||||||||||||| | |         |||||| ||| |||||  ||||||||||||  ||||| ||     
T  21081322 cttcttaagaattttcttcgacaacacaatgattccccttttgatcgctctaacttggagcttccgtttaacattccaacaatgaccttttgtctttcat 21081223  T
Q  206 caagatactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatcc 259  Q
     ||||||||| |||||||||| ||||||||| || || ||||| |||| |||||    
T  21081222 aaagatactagtggatggtctatgtcttgtaaaaacaacatgaacctctaatcc 21081169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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