View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0445_2D_low_5 (Length: 299)
Name: NF0445_2D_low_5
Description: NF0445_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_2D_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 49008834 - 49009108
Alignment:
| Q |
7 |
ttggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttgga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008834 |
ttggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatctcacttgga |
49008933 |
T |
|
| Q |
107 |
cagactcgaaacacaatgtcagaagtcccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaatattaatg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008934 |
cagactcgaaacacaatgtcagaagtcccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaatattaatg |
49009033 |
T |
|
| Q |
207 |
attgcttaggttaagatgaggatattatgcttctaccaatccttgatttcatttttctcaattcatgaccagatc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49009034 |
attgcttaggttaagatgaggatattatgcttctaccaatccttgatttcatttttctcaattcatgaccagatc |
49009108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1785 times since January 2019
Visitors: 3237