View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_2D_low_9 (Length: 258)
Name: NF0445_2D_low_9
Description: NF0445_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_2D_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 47709750 - 47709521
Alignment:
| Q |
13 |
tggacatcatgtcactaaaaatgaataacatttatagtaggtttaattactctgcctgttttgatcgtaaattatgtaaaagttcagatatcttgactaa |
112 |
Q |
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| T |
47709750 |
tggaaatcatgtcactaaaaatgaataacatttatagtaggtttaattactctgcctgttttgatcgtaaattatgtaaaagttcagatatcttgactaa |
47709651 |
T |
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| Q |
113 |
aattcaggaactcaattacaagttcagatatctgattagaaatagtttagatatggaccgagtaattaaaccttacatatagttgcttttacattaaatt |
212 |
Q |
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| T |
47709650 |
aattcaggaactcaattacaagttcagatatctgattagaaatagtttagatatggaccgagtaattaaaccttacatatagttgcttttacattaaatt |
47709551 |
T |
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| Q |
213 |
ataaactagttaaagtaaagggtaatttgt |
242 |
Q |
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| T |
47709550 |
ataaactagttaaagtaaagggtaatttgt |
47709521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 16560851 - 16560915
Alignment:
| Q |
177 |
attaaaccttacatatagttgcttttacattaaattataaactagttaaagtaaagggtaatttgt |
242 |
Q |
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||||||||||||||| ||||||||||||||||||| | ||||||||| |||| |||| |||||||| |
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| T |
16560851 |
attaaaccttacataaagttgcttttacattaaataacaaactagtt-aagtgaaggataatttgt |
16560915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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