View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0445_high_3 (Length: 347)
Name: NF0445_high_3
Description: NF0445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0445_high_3 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 25 - 347
Target Start/End: Original strand, 47418754 - 47419076
Alignment:
| Q |
25 |
catgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagacc |
124 |
Q |
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| T |
47418754 |
catgcaatttagataaatgttcagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgtattacacccaagtgatttagacc |
47418853 |
T |
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| Q |
125 |
aatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttg |
224 |
Q |
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| T |
47418854 |
aatgttcagatctggaattctccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggctg |
47418953 |
T |
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| Q |
225 |
tagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttctt |
324 |
Q |
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| T |
47418954 |
tagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaatggtggatctttcagtttctt |
47419053 |
T |
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| Q |
325 |
gactcatagcaatagaactggat |
347 |
Q |
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| T |
47419054 |
gactaatagcaatagaactggat |
47419076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 46 - 347
Target Start/End: Original strand, 47390415 - 47390716
Alignment:
| Q |
46 |
cagttgacacagatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattct |
145 |
Q |
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| T |
47390415 |
cagtcgacacagatccacctggcattctcttaggatcattgaaagaactctgacgttctgcacctaagtgatttagaccaatgctcggatgtggaatttg |
47390514 |
T |
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| Q |
146 |
ccttatgtgtaaatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttcca |
245 |
Q |
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| T |
47390515 |
ccttatgtgtgaatcatgaggatgaggttgtggtctgaaagatgatgatgaactagtggttgtcccggaaaaatggctgtagttaccaccactgcctcca |
47390614 |
T |
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| Q |
246 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgactcatagcaatagaactgg |
345 |
Q |
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| T |
47390615 |
tatgtcgatgggaaatgtatatgctgttgttgctgcttatttaggccttgcatgtgaacggcagatctttcagtttcttgactaacagcaatagaactgg |
47390714 |
T |
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| Q |
346 |
at |
347 |
Q |
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| T |
47390715 |
at |
47390716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 57 - 327
Target Start/End: Original strand, 47407540 - 47407810
Alignment:
| Q |
57 |
gatcaacctcgcattcacttagaatcgttgaatgtactctgccgttctacacccaagtgatttagaccaatgttcagatctggaattctccttatgtgta |
156 |
Q |
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| T |
47407540 |
gatccacctcgcattctcttaggatcattgaataaactctgctgttctacacccaagtgattgagaccaatgctctgatgtggaattctccttttgtgtg |
47407639 |
T |
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| Q |
157 |
aatcatgatgatgaagttgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgg |
256 |
Q |
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| T |
47407640 |
aattgagaggttgaggttgtggtcttagagatgataatgaaccagtgattttccccaaaaaaggattaaagttgccaccactgatttcatatggcgatgg |
47407739 |
T |
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| Q |
257 |
gaaatgtatatgctgttgttgctgcttattaaggccttgcatgtgaacggtggatctttcagtttcttgac |
327 |
Q |
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| T |
47407740 |
aaaatgtatatgttgttgttgctgattataaaagccttgtgtgtgaactggggtgttttcagtttcttgac |
47407810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 174 - 295
Target Start/End: Original strand, 47421362 - 47421483
Alignment:
| Q |
174 |
tgtggtctgagagatgataatgaaccagttattgtcccggaaaaatggttgtagttaccaccactgcttccatatgtcgatgggaaatgtatatgctgtt |
273 |
Q |
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| T |
47421362 |
tgtggtctgagagatgataatgaaccagtgattgtccccaaaaaagggttaaagttgcaaccactgatttcatatggcaatgggaaatgaatatgttgtt |
47421461 |
T |
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| Q |
274 |
gttgctgcttattaaggccttg |
295 |
Q |
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| T |
47421462 |
gttgctgattataaaagccttg |
47421483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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